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AgeCommit message (Expand)Author
2021-08-18Fix obvious linting errorsMuriithi Frederick Muriuki
2021-08-18Make child sequence a listMuriithi Frederick Muriuki
2021-08-18Add tests and fix errors caught with testsMuriithi Frederick Muriuki
2021-08-16Merge pull request #32 from genenetwork/heatmap_decompose_db_retrievalBonfaceKilz
2021-08-12Fix linting errorsMuriithi Frederick Muriuki
2021-08-12Import missing definitionsMuriithi Frederick Muriuki
2021-08-11use normal function for correlation (#34)Alexander Kabui
2021-08-09Build up the heatmap dataMuriithi Frederick Muriuki
2021-08-04Fix issues caught by pylintMuriithi Frederick Muriuki
2021-07-29Add partial type annotations for slink moduleMuriithi Frederick Muriuki
2021-07-29Add partial type annotations for slink moduleMuriithi Frederick Muriuki
2021-07-26Merge branch 'main' of github.com:genenetwork/genenetwork3Muriithi Frederick Muriuki
2021-07-26Fix issues caught by pylintMuriithi Frederick Muriuki
2021-07-26Check if corr_coefficient is NaN, since apparently it's stored as NaN instead...zsloan
2021-07-23Add data examples for `slink`. Implement function.Muriithi Frederick Muriuki
2021-07-23Iterate through all valid pairsMuriithi Frederick Muriuki
2021-07-23Extract function to flatten list of listsMuriithi Frederick Muriuki
2021-07-23Fix issue caught in `nearest` while testing `slink`Muriithi Frederick Muriuki
2021-07-23New function (`slink`): return [] on exceptionMuriithi Frederick Muriuki
2021-07-23Add dummy module documentationMuriithi Frederick Muriuki
2021-07-23Add docstring for `nearest' functionMuriithi Frederick Muriuki
2021-07-22Get shortest distance from two lists/tuples of member coordinatesMuriithi Frederick Muriuki
2021-07-22Extract common `is_list_or_tuple' functionMuriithi Frederick Muriuki
2021-07-22Test for shortest distance between members in a list and coordinateMuriithi Frederick Muriuki
2021-07-22Check that given list and both coordinates, we get shortest distanceMuriithi Frederick Muriuki
2021-07-22Check that all distances are positive or zeroMuriithi Frederick Muriuki
2021-07-22Check that distance from A to B is same as from B to AMuriithi Frederick Muriuki
2021-07-22Check that child distance from itself is zeroMuriithi Frederick Muriuki
2021-07-22Check the child lengths are same as length of parentMuriithi Frederick Muriuki
2021-07-22Add docstringMuriithi Frederick Muriuki
2021-07-22Check that list and its direct children are not emptyMuriithi Frederick Muriuki
2021-07-22Implement check for lists or tuplesMuriithi Frederick Muriuki
2021-07-21Extract tests from code in GN1Muriithi Frederick Muriuki
2021-07-20Implement the correlation functionMuriithi Frederick Muriuki
2021-07-20Add test for code to move over from GN1Muriithi Frederick Muriuki
2021-06-29Replace list with a tuple as an argument when setting success_codesBonfaceKilz
2021-06-29gn3: diff: Set success_codes when running the diff toolBonfaceKilz
2021-06-29Add a diffing functionBonfaceKilz
2021-06-23fix pylint issuesAlexander Kabui
2021-06-23minor fixes for biweight scriptAlexander Kabui
2021-06-20minor fix docstringAlexander Kabui
2021-06-20merge mainAlexander Kabui
2021-06-20make requested changes to biweightAlexander Kabui
2021-06-18Fixed pylint issueszsloan
2021-06-18Resolve mypy errors in computations/rqtl.pyzsloan
2021-06-18Fixed spelling of coeffient to coefficientzsloan
2021-06-18fix index error (#16)Alexander Kabui
2021-06-16add r-wgna packageAlexander Kabui
2021-06-16minor fixAlexander Kabui
2021-06-16refactor script and add testsAlexander Kabui