| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-03-30 | refactor retrieve trait sample data and tests | Alexander Kabui | |
| 2021-03-30 | modify getting sample data from db | Alexander Kabui | |
| 2021-03-30 | initial commit for creating dataset | Alexander Kabui | |
| 2021-03-30 | initial commit for creating trait and datasets | Alexander Kabui | |
| 2021-03-23 | Re-add mypy conf file | BonfaceKilz | |
| Deleted in 56ce88a | |||
| 2021-03-17 | gn3: computations: correlations: Apply autopep-8. | BonfaceKilz | |
| 2021-03-16 | Refactor/clean up correlations (#4) | Alexander Kabui | |
| * initial commit for Refactor/clean-up-correlation * add python scipy dependency * initial commit for sample correlation * initial commit for sample correlation endpoint * initial commit for integration and unittest * initial commit for registering correlation blueprint * add and modify unittest and integration tests for correlation * Add compute compute_all_sample_corr method for correlation * add scipy to requirement txt file * add tissue correlation for trait list * add unittest for tissue correlation * add lit correlation for trait list * add unittests for lit correlation for trait list * modify lit correlarion for trait list * add unittests for lit correlation for trait list * add correlation metho in dynamic url * add file format for expected structure input while doing sample correlation * modify input data structure -> add trait id * update tests for sample r correlation * add compute all lit correlation method * add endpoint for computing lit_corr * add unit and integration tests for computing lit corr * add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation * add unittest and integration tests for tissue correlation Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com> | |||
| 2021-03-10 | Fix k-compute command when "loco" is true | BonfaceKilz | |
| 2021-03-08 | Remove unused imports | BonfaceKilz | |
| 2021-03-08 | Delete "generate_gemma_computation_cmd" | BonfaceKilz | |
| 2021-03-08 | Add generic fn for computing k and gwa values | BonfaceKilz | |
| 2021-03-08 | Apply pep-8 formatting | BonfaceKilz | |
| Began using elpy's format code fn | |||
| 2021-03-08 | Move "generate_random_n_string" to file_utils | BonfaceKilz | |
| * gn3/computations/gemma.py (generaten_random_n_string): Move to... * gn3/file_utils.py: ... here. | |||
| 2021-03-08 | Fix failing tests | BonfaceKilz | |
| 2021-02-24 | Create a new helper function for generating k_values and GWA | BonfaceKilz | |
| 2021-02-24 | Add procedure that checks whether a list of paths exist | BonfaceKilz | |
| 2021-02-24 | Check if phenotype exists before creating one | BonfaceKilz | |
| 2021-02-24 | Add new procedure that computes the hash of an array of strings | BonfaceKilz | |
| 2021-02-24 | Add mypy-typing to function | BonfaceKilz | |
| * gn3/computations/gemma.py (generate_random_n_string): Add typing to function. | |||
| 2021-02-24 | Append random 6 chars to generated phenotype file | BonfaceKilz | |
| 2021-02-24 | Create a new method for generating a valid phenotype file on the fly | BonfaceKilz | |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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