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AgeCommit message (Expand)Author
2022-06-29use explicit parametersAlexander_Kabui
2022-06-29fix issuesAlexander_Kabui
2022-06-29pylint fixesAlexander
2022-06-29minor fixesAlexander
2022-06-29handle tmp files generationAlexander
2022-06-29parse output dataAlexander
2022-06-29pep8 formattingAlexander
2022-06-29init rust correlation moduleAlexander
2022-05-30Pass trait data as args to `fix_strains` and fix some bugsFrederick Muriuki Muriithi
2022-05-24New script to compute partial correlationsFrederick Muriuki Muriithi
2022-05-21Use multiprocessing to improve performanceFrederick Muriuki Muriithi
2022-05-21Process primary, target and control traits in a single iterationFrederick Muriuki Muriithi
2022-05-21Return generator object rather than tuplesFrederick Muriuki Muriithi
2022-05-06Fix linting and typing errorsFrederick Muriuki Muriithi
2022-05-06Hook up pcorrs with target traits computationsFrederick Muriuki Muriithi
2022-05-05Compute partial correlation with selected traitsFrederick Muriuki Muriithi
2022-05-05Extract common error checking. Rename function.Frederick Muriuki Muriithi
2022-05-03Refactor: Remove unnecessary loopFrederick Muriuki Muriithi
2022-03-29Remove unused moduleFrederick Muriuki Muriithi
2022-03-23Run python-black on file and fix other pylint issues.BonfaceKilz
2022-03-22Fixes pylint errorszsloan
2022-03-22Fixed mypy typing errorszsloan
2022-03-22Tried to make the docstrings more consistentzsloan
2022-03-22Add typing to some functionszsloan
2022-03-22Add functions for getting proximal/distal markers for each pseudomarker posit...zsloan
2022-03-22Added genofile name to inputs for processing R/qtl pair-scan results, since i...zsloan
2022-03-22Removed quotes from beginning and end of chromosome stringzsloan
2022-03-22Fixed a cople function calls to use the updated function nameszsloan
2022-03-22Create pairscan_for_figure and pairscan_for_table functions that return the D...zsloan
2022-03-22Added pairscan boolean kwarg and process_rqtl_pairscan function for reading i...zsloan
2022-03-15Feature/refactored pca (#79)Alexander Kabui
2022-03-11Fix typing errorsFrederick Muriuki Muriithi
2022-03-08Remove unused function and its testsFrederick Muriuki Muriithi
2022-03-08Fix tests, and issues caught by testsFrederick Muriuki Muriithi
2022-02-25Fix issue where 0's were treated as False for the primary trait inzsloan
2022-02-24gn3: computations: Call Popen with context manager.Arun Isaac
2022-02-24gn3: Explicitly specify UTF-8 to be the file encoding.Arun Isaac
2022-02-21Fix minor issues introduced while fixing linting errorsFrederick Muriuki Muriithi
2022-02-21Fix a myriad of linter issuesFrederick Muriuki Muriithi
2022-02-21Test partial corrs API with mix of existing and non-existing control traitsFrederick Muriuki Muriithi
2022-02-19Test partial corrs endpoint with non-existing control traitsFrederick Muriuki Muriithi
2022-02-18Test partial correlations endpoint with non-existent primary traitsFrederick Muriuki Muriithi
2022-02-17Add property tests for `dictify_by_samples`Frederick Muriuki Muriithi
2022-02-08Merge iterations to remove unnecessary computationsFrederick Muriuki Muriithi
2022-02-08Remove multiprocessing for stabilityFrederick Muriuki Muriithi
2022-02-08Give sorting functions more descriptive namesFrederick Muriuki Muriithi
2022-02-08Use multiprocessing to speed up computationFrederick Muriuki Muriithi
2022-02-08Remove unnecessary computationFrederick Muriuki Muriithi
2022-02-02refactor code for invoking ctl scriptAlexander Kabui
2022-02-02pep8 formattingAlexander Kabui
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