aboutsummaryrefslogtreecommitdiff
path: root/gn3/computations
AgeCommit message (Expand)Author
2022-03-29Remove unused moduleFrederick Muriuki Muriithi
2022-03-23Run python-black on file and fix other pylint issues.BonfaceKilz
2022-03-22Fixes pylint errorszsloan
2022-03-22Fixed mypy typing errorszsloan
2022-03-22Tried to make the docstrings more consistentzsloan
2022-03-22Add typing to some functionszsloan
2022-03-22Add functions for getting proximal/distal markers for each pseudomarker posit...zsloan
2022-03-22Added genofile name to inputs for processing R/qtl pair-scan results, since i...zsloan
2022-03-22Removed quotes from beginning and end of chromosome stringzsloan
2022-03-22Fixed a cople function calls to use the updated function nameszsloan
2022-03-22Create pairscan_for_figure and pairscan_for_table functions that return the D...zsloan
2022-03-22Added pairscan boolean kwarg and process_rqtl_pairscan function for reading i...zsloan
2022-03-15Feature/refactored pca (#79)Alexander Kabui
2022-03-11Fix typing errorsFrederick Muriuki Muriithi
2022-03-08Remove unused function and its testsFrederick Muriuki Muriithi
2022-03-08Fix tests, and issues caught by testsFrederick Muriuki Muriithi
2022-02-25Fix issue where 0's were treated as False for the primary trait inzsloan
2022-02-24gn3: computations: Call Popen with context manager.Arun Isaac
2022-02-24gn3: Explicitly specify UTF-8 to be the file encoding.Arun Isaac
2022-02-21Fix minor issues introduced while fixing linting errorsFrederick Muriuki Muriithi
2022-02-21Fix a myriad of linter issuesFrederick Muriuki Muriithi
2022-02-21Test partial corrs API with mix of existing and non-existing control traitsFrederick Muriuki Muriithi
2022-02-19Test partial corrs endpoint with non-existing control traitsFrederick Muriuki Muriithi
2022-02-18Test partial correlations endpoint with non-existent primary traitsFrederick Muriuki Muriithi
2022-02-17Add property tests for `dictify_by_samples`Frederick Muriuki Muriithi
2022-02-08Merge iterations to remove unnecessary computationsFrederick Muriuki Muriithi
2022-02-08Remove multiprocessing for stabilityFrederick Muriuki Muriithi
2022-02-08Give sorting functions more descriptive namesFrederick Muriuki Muriithi
2022-02-08Use multiprocessing to speed up computationFrederick Muriuki Muriithi
2022-02-08Remove unnecessary computationFrederick Muriuki Muriithi
2022-02-02refactor code for invoking ctl scriptAlexander Kabui
2022-02-02pep8 formattingAlexander Kabui
2022-02-02new line fixAlexander Kabui
2022-02-02fix comprehension listAlexander Kabui
2022-01-22process ctl plot data imgAlexander Kabui
2022-01-22read stdout data;handle exceptionsAlexander Kabui
2022-01-22init file to call ctl scriptAlexander Kabui
2022-01-12Update return type. Remove duplicate import.Frederick Muriuki Muriithi
2022-01-10Use the correct letter case for the keysFrederick Muriuki Muriithi
2022-01-10Indicate that string is an f-stringFrederick Muriuki Muriithi
2022-01-10Remove all pairs with 'None' as the valueFrederick Muriuki Muriithi
2022-01-10Replace unoptimised function with optimised oneFrederick Muriuki Muriithi
2022-01-10Convert NaN to NoneFrederick Muriuki Muriithi
2022-01-10Add optimised entry for partial correlationsFrederick Muriuki Muriithi
2022-01-10Rework database functions to fetch multiple itemsFrederick Muriuki Muriithi
2022-01-05Merge pull request #64 from jgarte/type-hint-normalize-valuesBonfaceKilz
2021-12-24Fix typing errorsFrederick Muriuki Muriithi
2021-12-24Fix linting errorsFrederick Muriuki Muriithi
2021-12-24Fix sortingFrederick Muriuki Muriithi
2021-12-24Return the correlation method usedFrederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-02 09:30:55 +0000