genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2021-11-11	Merge branch 'main' into feature/add_rqtl_pairscan	zsloan
2021-11-11	pylint fixes and pep8 formatting	Alexander Kabui
2021-11-11	fix target and base sample data order	Alexander Kabui
2021-11-11	fix:spawned processes memory issues	Alexander Kabui
2021-11-11	replace list with generators	Alexander Kabui
2021-11-04	Create blackbox tests for some functions migrated from R	Frederick Muriuki Muriithi
2021-11-04	Stub `determine_partials`	Frederick Muriuki Muriithi
2021-11-04	Implement `compute_partial_correlations_fast`	Frederick Muriuki Muriithi
2021-11-04	Retrieve indices of the selected samples	Frederick Muriuki Muriithi
2021-11-04	Explicitly round the values	Frederick Muriuki Muriithi
2021-11-04	Specify ten (10) decimal places	Frederick Muriuki Muriithi
2021-11-04	Fix linting and typing errors	Frederick Muriuki Muriithi
2021-11-04	Complete `build_temporary_tissue_correlations_table`	Frederick Muriuki Muriithi
2021-11-04	Complete implementation of `batch_computed_tissue_correlation`	Frederick Muriuki Muriithi
2021-11-04	Move `correlations_of_all_tissue_traits`	Frederick Muriuki Muriithi
2021-11-04	Implement `tissue_correlation` function	Frederick Muriuki Muriithi
2021-11-04	Move the function to computations module	Frederick Muriuki Muriithi
2021-11-04	Move the partial_correlations module to gn3.computations	Frederick Muriuki Muriithi
2021-10-29	Feature/biweight reimplementation (#47)	Alexander Kabui
2021-10-25	mypy:Incompatible types in assignment fix	Alexander Kabui
2021-10-25	mypy fix for none stdout	Alexander Kabui
2021-10-25	pylint and pep8 formatting	Alexander Kabui
2021-10-25	fix unittests	Alexander Kabui
2021-10-25	minor modification for emitting data:add namespaces	Alexander Kabui
2021-10-25	pep8 formatting,pylint fixes	Alexander Kabui
2021-10-25	add socket obj and emit process	Alexander Kabui
2021-10-25	fix issues serializing byte string	Alexander Kabui
2021-10-25	rename key to image_data	Alexander Kabui
2021-10-25	add function to process images	Alexander Kabui
2021-10-25	add function to capture output in real time	Alexander Kabui
2021-10-12	Fixes pylint errors	zsloan
2021-10-12	Fixed mypy typing errors	zsloan
2021-10-12	Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into featu...	zsloan
2021-09-27	add file not found exception	Alexander Kabui
2021-09-27	return str error for exception	Alexander Kabui
2021-09-27	fix merge conflicts	Alexander Kabui
2021-09-27	Narrow the exception and add comments	Frederick Muriuki Muriithi
2021-09-27	Update terminology: `strain` to `sample`	Frederick Muriuki Muriithi
2021-09-23	Tried to make the docstrings more consistent	zsloan
2021-09-23	Merge branch 'feature/add_rqtl_pairscan' of https://github.com/zsloan/genenet...	zsloan
2021-09-23	Add typing to some functions	zsloan
2021-09-23	Add functions for getting proximal/distal markers for each pseudomarker posit...	zsloan
2021-09-23	Added genofile name to inputs for processing R/qtl pair-scan results, since i...	zsloan
2021-09-23	Removed quotes from beginning and end of chromosome string	zsloan
2021-09-23	Fixed a cople function calls to use the updated function names	zsloan
2021-09-23	Create pairscan_for_figure and pairscan_for_table functions that return the D...	zsloan
2021-09-23	Added pairscan boolean kwarg and process_rqtl_pairscan function for reading i...	zsloan
2021-09-23	minor fixes for endpoint	Alexander Kabui
2021-09-23	Return r error if returncode!=0	Alexander Kabui
2021-09-23	read generated files from r and return output	Alexander Kabui