genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2021-10-12	Fixes pylint errors	zsloan

2021-10-12	Fixed mypy typing errors	zsloan

2021-09-23	Tried to make the docstrings more consistent	zsloan

2021-09-23	Merge branch 'feature/add_rqtl_pairscan' of ↵	zsloan
	https://github.com/zsloan/genenetwork3 into feature/add_rqtl_pairscan
2021-09-23	Add typing to some functions	zsloan

2021-09-23	Add functions for getting proximal/distal markers for each pseudomarker ↵	zsloan
	position in pair-scan results + return only the sorted top 500 results
2021-09-23	Added genofile name to inputs for processing R/qtl pair-scan results, since ↵	zsloan
	it's needed to store the proximal/distal markers for each position
2021-09-23	Removed quotes from beginning and end of chromosome string	zsloan

2021-09-23	Fixed a cople function calls to use the updated function names	zsloan

2021-09-23	Create pairscan_for_figure and pairscan_for_table functions that return the ↵	zsloan
	Dict and List respectively used for the pair scan figure and the table showing the results
2021-09-23	Added pairscan boolean kwarg and process_rqtl_pairscan function for reading ↵	zsloan
	in pairscan results + renamed process_rqtl_output to process_rqtl_mapping to distinguish between that and pairscan
2021-08-03	Create pairscan_for_figure and pairscan_for_table functions that return the ↵	zsloan
	Dict and List respectively used for the pair scan figure and the table showing the results
2021-07-26	Added pairscan boolean kwarg and process_rqtl_pairscan function for reading ↵	zsloan
	in pairscan results + renamed process_rqtl_output to process_rqtl_mapping to distinguish between that and pairscan
2021-06-18	Fixed pylint issues	zsloan

2021-06-18	Resolve mypy errors in computations/rqtl.py	zsloan

2021-05-25	Include code that processes rqtl output files and returns actual results ↵	zsloan
	instead of just the output filename
2021-05-19	Temporarily replace forward-slashes with underscores, since they can be ↵	zsloan
	included in the hashes used for filenames
2021-05-18	Fixed generate_rqtl_cmd to make the kwarg hash from a combination of ↵	zsloan
	keywords and arguments + account for boolean kwargs without values (like --interval or --covar)
2021-05-18	Fixed variety of issues detected by pylint	zsloan

2021-05-17	Created compose_rqtl_command and generate_rqtl_command to create the actual ↵	zsloan
	command to be run from the command line; used the same pattern as for GEMMA for consistency