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path: root/gn3/computations/partial_correlations.py
AgeCommit message (Expand)Author
2022-05-30Pass trait data as args to `fix_strains` and fix some bugsFrederick Muriuki Muriithi
2022-05-24New script to compute partial correlationsFrederick Muriuki Muriithi
2022-05-21Use multiprocessing to improve performanceFrederick Muriuki Muriithi
2022-05-21Process primary, target and control traits in a single iterationFrederick Muriuki Muriithi
2022-05-21Return generator object rather than tuplesFrederick Muriuki Muriithi
2022-05-06Fix linting and typing errorsFrederick Muriuki Muriithi
2022-05-06Hook up pcorrs with target traits computationsFrederick Muriuki Muriithi
2022-05-05Compute partial correlation with selected traitsFrederick Muriuki Muriithi
2022-05-05Extract common error checking. Rename function.Frederick Muriuki Muriithi
2022-05-03Refactor: Remove unnecessary loopFrederick Muriuki Muriithi
2022-03-11Fix typing errorsFrederick Muriuki Muriithi
2022-03-08Remove unused function and its testsFrederick Muriuki Muriithi
2022-02-24gn3: Explicitly specify UTF-8 to be the file encoding.Arun Isaac
2022-02-21Fix minor issues introduced while fixing linting errorsFrederick Muriuki Muriithi
2022-02-21Fix a myriad of linter issuesFrederick Muriuki Muriithi
2022-02-21Test partial corrs API with mix of existing and non-existing control traitsFrederick Muriuki Muriithi
2022-02-19Test partial corrs endpoint with non-existing control traitsFrederick Muriuki Muriithi
2022-02-18Test partial correlations endpoint with non-existent primary traitsFrederick Muriuki Muriithi
2022-02-17Add property tests for `dictify_by_samples`Frederick Muriuki Muriithi
2022-02-08Merge iterations to remove unnecessary computationsFrederick Muriuki Muriithi
2022-02-08Remove multiprocessing for stabilityFrederick Muriuki Muriithi
2022-02-08Give sorting functions more descriptive namesFrederick Muriuki Muriithi
2022-02-08Use multiprocessing to speed up computationFrederick Muriuki Muriithi
2022-02-08Remove unnecessary computationFrederick Muriuki Muriithi
2022-01-10Use the correct letter case for the keysFrederick Muriuki Muriithi
2022-01-10Indicate that string is an f-stringFrederick Muriuki Muriithi
2022-01-10Remove all pairs with 'None' as the valueFrederick Muriuki Muriithi
2022-01-10Replace unoptimised function with optimised oneFrederick Muriuki Muriithi
2022-01-10Convert NaN to NoneFrederick Muriuki Muriithi
2022-01-10Rework database functions to fetch multiple itemsFrederick Muriuki Muriithi
2021-12-24Fix typing errorsFrederick Muriuki Muriithi
2021-12-24Fix sortingFrederick Muriuki Muriithi
2021-12-24Return the correlation method usedFrederick Muriuki Muriithi
2021-12-24Reduce the total amount of data to be outputFrederick Muriuki Muriithi
2021-12-24Add dataset type to the resultsFrederick Muriuki Muriithi
2021-12-17Add "success" status to final computation resultsFrederick Muriuki Muriithi
2021-12-14linting: Fix obvious linting issuesFrederick Muriuki Muriithi
2021-12-14mypy: ignore some imports and errorsFrederick Muriuki Muriithi
2021-12-14TO REVERT: Add logging to see data frameFrederick Muriuki Muriithi
2021-12-14Remove any items with less than 3 samplesFrederick Muriuki Muriithi
2021-12-14Fix dataset: use target dataset not primaryFrederick Muriuki Muriithi
2021-12-13Provide missing functionFrederick Muriuki Muriithi
2021-12-13Fix the removal of controls for corresponding Nones in targetsFrederick Muriuki Muriithi
2021-12-13Return the primary and control traits in addition to resultsFrederick Muriuki Muriithi
2021-12-13Run partial correlations against chosen databaseFrederick Muriuki Muriithi
2021-12-09Prevent error on no result. Fix indexingFrederick Muriuki Muriithi
2021-12-08Provide group from primary traitFrederick Muriuki Muriithi
2021-11-29Fix linting errorsFrederick Muriuki Muriithi
2021-11-29Provide entry-point function for the partial correlationsFrederick Muriuki Muriithi
2021-11-23Fix a myriad of linting errorsFrederick Muriuki Muriithi
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