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path: root/gn3/computations/heatmap.py
AgeCommit message (Expand)Author
2021-08-18Test the clustering...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/computations/heatmap.py: Fix clustering bugs * tests/unit/computations/test_heatmap.py: Add new tests. Fix linting issues. Test and fix the clustering function. Muriithi Frederick Muriuki
2021-08-18Add tests and fix errors caught with tests...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/computations/heatmap.py: fix errors * tests/unit/computations/test_heatmap.py: new tests Add new tests with the expected source data format, and expected results. Fix all errors that were caught by running the tests Muriithi Frederick Muriuki
2021-08-12Fix linting errors...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Fix some errors caught by the linter. Muriithi Frederick Muriuki
2021-08-12Import missing definitions...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Import some missing definitions. Muriithi Frederick Muriuki
2021-08-09Build up the heatmap data...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Add code to compute and organise the data that will be used to draw the final heatmap. This varies significantly in how it works from the original, but it still tries to retain the general flow of data. Muriithi Frederick Muriuki