genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2021-06-29	Replace list with a tuple as an argument when setting success_codes	BonfaceKilz
	* gn3/commands.py (run_cmd): Replace type of success_codes from List to Tuple * gn3/computations/diff.py (generate_diff): Pass success_codes as a Tuple when calling "run_cmd".
2021-06-29	gn3: commands: Add extra arg that sets the success codes to check	BonfaceKilz
	* gn3/commands.py (run_cmd): Some commands like "diff" return non-standard error codes. To make this fn more robust, add an extra optional argument that sets what successful codes to check.
2021-06-25	Check for the correct result code	BonfaceKilz
	When programs terminate with an error, they usually return a -1!
2021-06-18	Fix R/qtl command and the way keyword arguments are passed	zsloan

2021-05-18	Removed len from this if statement, since an empty list evaluates to False ↵	zsloan
	by itself
2021-05-18	Account for boolean kwargs in compose_rqtl_cmd	zsloan

2021-05-17	Created compose_rqtl_command and generate_rqtl_command to create the actual ↵	zsloan
	command to be run from the command line; used the same pattern as for GEMMA for consistency
2021-03-10	Queue the command only once	BonfaceKilz

2021-03-10	Call Redis hset correctly in the right order	BonfaceKilz

2021-03-10	Apply yapf file formatting to file	BonfaceKilz

2021-03-08	bug: Put a space between gemma-wrapper args	BonfaceKilz

2021-03-08	gn3: commands: Update docstring	BonfaceKilz

2021-03-08	Make the name of the redis job queue configurable	BonfaceKilz

2021-02-24	gn3: commands: Remove token and metadata_filename args	BonfaceKilz

2021-02-16	Add extra option to set email when queueing CMD	BonfaceKilz
	The e-mail field will be used to send the results of the computation when it is completed.
2021-02-16	gn3: commands: Add new procedure for running a command	BonfaceKilz
	* gn3/commands.py (run_command): New procedure.
2021-02-12	Add new procedure for queueing a command	BonfaceKilz
	* gn3/commands.py (queue_cmd): New procedure. * tests/unit/test_commands.py: New test-cases for ^^.
2021-02-12	Add new procedure for composing a gemma cmd	BonfaceKilz
	* gn3/commands.py: New file * tests/unit/test_commands.py: New test-cases for ^^.