| Age | Commit message (Expand) | Author |
|---|
| 2023-04-10 | Add search and link for mRNA Assay datasets. | Frederick Muriuki Muriithi |
| 2023-04-10 | Update expected request key. | Frederick Muriuki Muriithi |
| 2023-04-10 | Enable search, filtering out selected, but not linked data...When a user selects some datasets and does a new search, we filter out the
selected datasets too, even though they are yet to be linked.
| Frederick Muriuki Muriithi |
| 2023-04-08 | auth: Link genotype datasets to groups. | Frederick Muriuki Muriithi |
| 2023-04-04 | auth: Search for linking genotype datasets. | Frederick Muriuki Muriithi |
| 2023-03-23 | auth: list the species in the database. | Frederick Muriuki Muriithi |
| 2023-03-22 | auth: data linking: build functions to fetch unlinked phenotypes...This is an initial attempt: it does not allow a search to be carried out
across the data available in the database.
I will need to rework this, probably start from the UI and work backward.
| Frederick Muriuki Muriithi |
| 2023-03-22 | auth: Enable linking multiple datasets to the group at once. | Frederick Muriuki Muriithi |
| 2023-03-20 | auth: data: Enable offset in queries...Enable the 'OFFSET' clause in the queries to allow for progressive fetching of
data from the database using the 'Previous' and 'Next' buttons.
| Frederick Muriuki Muriithi |
| 2023-03-20 | auth: data: List Phenotypes at the trait level...For Phenotypes, list the Phenotype traits rather than the dataset(s).
| Frederick Muriuki Muriithi |
| 2023-03-18 | oauth2: resources: toggle whether a resource is public or not | Frederick Muriuki Muriithi |
| 2023-03-18 | auth: resources: Disallow duplicate resource names. | Frederick Muriuki Muriithi |
| 2023-03-15 | auth: Data Migrations: Rework migration trigger...Rework the migration trigger endpoint such that it does a bulk import of all
the resources in the redis store.
It also expects that the user that triggers the migration have the appropriate
privileges.
| Frederick Muriuki Muriithi |
| 2023-03-14 | auth: Fix some linting and typing issues. | Frederick Muriuki Muriithi |
| 2023-03-13 | oauth2: data: Temporarily escalate privileges to enable migration...The functions that fetch the unlinked data have checks to ensure they are
called by users with the appropriate privileges. This commit enables a
temporary escalation of privileges to enable fetching the data, so as to allow
successful data migration.
| Frederick Muriuki Muriithi |
| 2023-03-13 | auth: separate user detail migration from data migration...Due to the fact that the data migration requires higher privileges than the
user details, separate the user details migration endpoint from the data
migrations endpoint.
| Frederick Muriuki Muriithi |
| 2023-03-10 | auth: data-migration: Fix minor bugs | Frederick Muriuki Muriithi |
| 2023-03-09 | auth: redis data: migrate data in redis...Implement the code to migrate the data from redis to SQLite.
| Frederick Muriuki Muriithi |
| 2023-03-09 | auth: data migration: Data migration outline...Provide an outline of the data migration steps to be taken from some results
of the experiments with the data in redis.
| Frederick Muriuki Muriithi |
| 2023-03-09 | auth: introspection: Protect introspection endpoint...The introspection endpoint could contain privileged information, thus requires
that the endpoint be protected. This commit ensures that a user has
authenticated to the system and that the client they are using be one of the
allowed clients.
| Frederick Muriuki Muriithi |
| 2023-03-07 | auth: group_roles: Enable addition/deletion of privileges | Frederick Muriuki Muriithi |
| 2023-03-07 | auth: resources: unassign roles on resource from a user. | Frederick Muriuki Muriithi |
| 2023-03-07 | auth: user_by_id: Return a user or raise an exception...Fetching the user by id should return the user, or raise an exception. We get
rid of the Maybe monad here since it is leading to some weird code flows -
probably the wrong monad to use here.
| Frederick Muriuki Muriithi |
| 2023-03-06 | auth: resources: Enable assigning a user roles on resources | Frederick Muriuki Muriithi |
| 2023-03-06 | auth: resources: Link role's group to the resource's group | Frederick Muriuki Muriithi |
| 2023-03-06 | auth: resources: Get all users with access to a particular resource. | Frederick Muriuki Muriithi |
| 2023-03-03 | auth: Enable viewing group role details. | Frederick Muriuki Muriithi |
| 2023-03-03 | auth: group roles: enable creation and listing of group roles. | Frederick Muriuki Muriithi |
| 2023-03-02 | auth: user registration: Rework error checking. Add email validation | Frederick Muriuki Muriithi |
| 2023-02-28 | auth: Unlink data from resources...Enable the data editor to unlink data from a particular resource.
data-access-levels-endpoint | Frederick Muriuki Muriithi |
| 2023-02-28 | auth: Unlink data from resources...Enable the data editor to unlink data from a particular resource.
| Frederick Muriuki Muriithi |
| 2023-02-27 | auth: Endpoint to get access levels for data...When the endpoint is accessed with a list of traits, it should/will respond
with the access privileges for each of the traits attached for the active
user.
| Frederick Muriuki Muriithi |
| 2023-02-24 | auth: resources: Fix query for data not linked to resources | Frederick Muriuki Muriithi |
| 2023-02-24 | auth: resources: Fix queries loading resources data. | Frederick Muriuki Muriithi |
| 2023-02-24 | auth: resources: Link data to resources. | Frederick Muriuki Muriithi |
| 2023-02-23 | auth: Link data in MySQL to the groups (in SQLite)...In order for the group leaders (and other resource creators) to be able to
link data to the resources, the data needs to be first linked to the relevant
group.
This commit enables the system admin to link the data in MySQL to the groups.
| Frederick Muriuki Muriithi |
| 2023-02-22 | auth: List data not linked to any group. | Frederick Muriuki Muriithi |
| 2023-02-21 | auth: resources: Attach resource data and list unlinked data....Load the data that is attached to a particular resource together with the
resource.
List any unlinked data: useful when linking data to resources.
| Frederick Muriuki Muriithi |
| 2023-02-10 | Return empty tuple rather than Nothing...When user has no roles assigned, return an empty tuple rather than
pymonad.maybe.Nothing to ease maintenance.
| Frederick Muriuki Muriithi |
| 2023-02-09 | auth: Reject request to join a group....* gn3/auth/authorisation/groups/models.py: Modify function to either accept or
reject join requests.
* gn3/auth/authorisation/groups/views.py: Provide endpoint to reject join
requests.
* migrations/auth/20230207_01_r0bkZ-create-group-join-requests-table.py:
Prevent user from applying to join the same group more than once.
| Frederick Muriuki Muriithi |
| 2023-02-09 | auth: users: Check whether a user has an active join request. | Frederick Muriuki Muriithi |
| 2023-02-08 | auth: groups: handle join requests. | Frederick Muriuki Muriithi |
| 2023-02-07 | auth: groups: Enable users to request to join group. | Frederick Muriuki Muriithi |
| 2023-02-06 | auth: resource: Enable viewing the details of a resource. | Frederick Muriuki Muriithi |
| 2023-02-03 | oauth: enable resource creation | Frederick Muriuki Muriithi |
| 2023-02-03 | auth: tests: mock token acquisition. Fix minor bugs. | Frederick Muriuki Muriithi |
| 2023-02-02 | auth: Improve authorisation...Retrieve the token, and user in the authorisation decorator to enable checking
of privileges.
| Frederick Muriuki Muriithi |
| 2023-02-02 | auth: Reorganise modules/packages for easier dev and maintenance...Split the views/routes into separate modules each dealing with a narrower
scope of the application to aid in maintenance, and help with making the
development easier.
| Frederick Muriuki Muriithi |
| 2023-01-31 | auth: Retrieve group members. | Frederick Muriuki Muriithi |
| 2023-01-31 | auth: Remove the @authenticated_p decorator...The @authenticated_p decorator (and function), is an artifact of the original
development ideas and should be removed from use.
| Frederick Muriuki Muriithi |
