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2023-02-28auth: Unlink data from resources...Enable the data editor to unlink data from a particular resource. data-access-levels-endpointFrederick Muriuki Muriithi
2023-02-28auth: Unlink data from resources...Enable the data editor to unlink data from a particular resource. Frederick Muriuki Muriithi
2023-02-27auth: Endpoint to get access levels for data...When the endpoint is accessed with a list of traits, it should/will respond with the access privileges for each of the traits attached for the active user. Frederick Muriuki Muriithi
2023-02-24auth: resources: Fix query for data not linked to resourcesFrederick Muriuki Muriithi
2023-02-24auth: resources: Fix queries loading resources data.Frederick Muriuki Muriithi
2023-02-24auth: resources: Link data to resources.Frederick Muriuki Muriithi
2023-02-23auth: Link data in MySQL to the groups (in SQLite)...In order for the group leaders (and other resource creators) to be able to link data to the resources, the data needs to be first linked to the relevant group. This commit enables the system admin to link the data in MySQL to the groups. Frederick Muriuki Muriithi
2023-02-22auth: List data not linked to any group.Frederick Muriuki Muriithi
2023-02-21auth: resources: Attach resource data and list unlinked data....Load the data that is attached to a particular resource together with the resource. List any unlinked data: useful when linking data to resources. Frederick Muriuki Muriithi
2023-02-10Return empty tuple rather than Nothing...When user has no roles assigned, return an empty tuple rather than pymonad.maybe.Nothing to ease maintenance. Frederick Muriuki Muriithi
2023-02-09auth: Reject request to join a group....* gn3/auth/authorisation/groups/models.py: Modify function to either accept or reject join requests. * gn3/auth/authorisation/groups/views.py: Provide endpoint to reject join requests. * migrations/auth/20230207_01_r0bkZ-create-group-join-requests-table.py: Prevent user from applying to join the same group more than once. Frederick Muriuki Muriithi
2023-02-09auth: users: Check whether a user has an active join request.Frederick Muriuki Muriithi
2023-02-08auth: groups: handle join requests.Frederick Muriuki Muriithi
2023-02-07auth: groups: Enable users to request to join group.Frederick Muriuki Muriithi
2023-02-06auth: resource: Enable viewing the details of a resource.Frederick Muriuki Muriithi
2023-02-03oauth: enable resource creationFrederick Muriuki Muriithi
2023-02-03auth: tests: mock token acquisition. Fix minor bugs.Frederick Muriuki Muriithi
2023-02-02auth: Improve authorisation...Retrieve the token, and user in the authorisation decorator to enable checking of privileges. Frederick Muriuki Muriithi
2023-02-02auth: Reorganise modules/packages for easier dev and maintenance...Split the views/routes into separate modules each dealing with a narrower scope of the application to aid in maintenance, and help with making the development easier. Frederick Muriuki Muriithi
2023-01-31auth: Retrieve group members.Frederick Muriuki Muriithi
2023-01-31auth: Remove the @authenticated_p decorator...The @authenticated_p decorator (and function), is an artifact of the original development ideas and should be removed from use. Frederick Muriuki Muriithi
2023-01-30auth: Do not treat not finding a group as an error...Stop treating not finding a group for a user as an error, since that is an actual expected state in the system at some point. Rather, restore the use of Maybe rather than using Either. We can raise the NotFoundError at the API level rather than at database retrival level. Frederick Muriuki Muriithi
2023-01-30auth: API: retrieve resourcesFrederick Muriuki Muriithi
2023-01-30auth: groups: cleanup code...Refactor to use the `.either` method call in a cleaner way. Rework the imports. Frederick Muriuki Muriithi
2023-01-30auth: API: Retrieve a user's group...Add endpoint to retrieve the group in which the user is a member. Frederick Muriuki Muriithi
2023-01-28auth: Enable retrieval of a role by id.Frederick Muriuki Muriithi
2023-01-28auth: rework dictify...Define a Protocol type to use with the `dictify` function and implement the `dictify` methods for the various classes. Frederick Muriuki Muriithi
2023-01-28auth: Store error_code in Exception for flexibility...To allow for different error codes for the various exceptions, store the error_code in the exception objects and retrieve it from there when generating the response. Frederick Muriuki Muriithi
2023-01-23auth: create group: Fix group creation....* gn3/auth/authorisation/checks.py: Enable passing user to authorisation checking function. Raise error on authorisation failure for consistent error handling. * gn3/auth/authorisation/groups.py: Add user to group, updating the privileges as appropriate. * gn3/auth/authorisation/resources.py: Fix resources querying * gn3/auth/authorisation/roles.py: Assign/revoke roles by name * gn3/auth/authorisation/views.py: Create group * migrations/auth/20221108_01_CoxYh-create-the-groups-table.py: Add group_metadata field * tests/unit/auth/fixtures/group_fixtures.py: fix tests * tests/unit/auth/test_groups.py: fix tests * tests/unit/auth/test_resources.py: fix tests * tests/unit/auth/test_roles.py: fix tests Frederick Muriuki Muriithi
2023-01-21auth: Groups - Fetch all existing groupsFrederick Muriuki Muriithi
2023-01-21auth: Roles - Fix bug with role retrieval.Frederick Muriuki Muriithi
2023-01-19auth: Fix user registration...The code checking for errors was buggy and would let empty values through. The sqlite3.IntegrityError exception was not being handled correctly, and would cause a failure in the application. This commit fixes the issues noted above. * gn3/auth/authorisation/roles.py: fix bug in generating query params * gn3/auth/authorisation/views.py: fix error checking code. Raise exception if email is already registered. Frederick Muriuki Muriithi
2023-01-16auth: update privileges format...Save privileges with ids of the form <top-level>:<sub-level>:<privilege-name> rather than using a UUID, to reduce indirection levels. * migrations/auth/20230116_01_KwuJ3-rework-privileges-schema.py: new migration to change the schema and IDs for the privileges. * Update code to use new privileges format * gn3/auth/authorisation/checks.py * gn3/auth/authorisation/groups.py * gn3/auth/authorisation/privileges.py * gn3/auth/authorisation/resources.py * gn3/auth/authorisation/roles.py * migrations/auth/20230116_01_KwuJ3-rework-privileges-schema.py * tests/unit/auth/fixtures/role_fixtures.py * tests/unit/auth/test_groups.py * tests/unit/auth/test_privileges.py * tests/unit/auth/test_roles.py Frederick Muriuki Muriithi
2023-01-11auth: assign default role. separate group creation from group admin...A newly registered user will have the ability to create a group. Once a user is a member of a group, either by creating a new group, or being added to a group, they should not be able to create any more groups, i.e. they lose the 'create-group' (and/or equivalent) privileges. This means that the group-administration privileges should be separated from the group-creation privilege. * gn3/auth/authorisation/roles.py: assign default roles to user on registration * gn3/auth/authorisation/views.py: assign default roles to user on registration * migrations/auth/20230111_01_Wd6IZ-remove-create-group-privilege-from-group-leader.py: separate group-creation role from group-administration role. * tests/unit/auth/fixtures/user_fixtures.py: Add group-creation role to test user * tests/unit/auth/test_roles.py: Add the group-creation role explicitly in the expected results for the test Frederick Muriuki Muriithi
2023-01-05auth: Persist the user's registration details...If the registration details pass the validations steps, then persist the details in the database and respond with details about the newly created user. * gn3/auth/authentication/users.py: new functions * `save_user`: create and persist a new user * `set_user_password`: hash and persist the new password for the given user * gn3/auth/authorisation/views.py: Persist the user details and respond with the newly persisted user details. Frederick Muriuki Muriithi
2023-01-04auth: Add `/register-user` endpoint...* gn3/app.py: register top-level error handlers. reorganise oauth2 blueprint. * gn3/auth/__init__.py: reorganise oaut2 blueprint. * gn3/auth/authentication/oauth2/views.py: reorganise oauth2 blueprint. * gn3/auth/authorisation/exceptions.py -> gn3/auth/authorisation/errors.py * gn3/auth/authorisation/groups.py: rename file/module * gn3/auth/authorisation/resources.py: rename file/module * gn3/auth/authorisation/views.py: Add `/register-user` endpoint * gn3/auth/blueprint.py: reorganise oauth2 blueprint. * gn3/errors.py: register top-level error handlers. Frederick Muriuki Muriithi
2023-01-04auth: return group info as part of user details...* gn3/app.py: import blueprint from authorisation views inorder to get all endpoints * gn3/auth/authentication/oauth2/views.py: remove the `/user` endpoint * gn3/auth/authorisation/views.py: add the `/user` endpoint and add the group information to the user details. Frederick Muriuki Muriithi
2023-01-04auth: Return only non-resource roles on `/user-roles` endpoint...Resource roles will be returned as part of the resources request. * gn3/auth/authorisation/roles.py: Simplify query - only get non-resource roles * gn3/auth/authorisation/views.py: update docstring Frederick Muriuki Muriithi
2023-01-03auth: Fetch all of a user's roles....* gn3/auth/authorisation/roles.py: Fetch roles from DB * gn3/auth/authorisation/views.py: Provide API endpoint for user roles * tests/unit/auth/test_roles.py: Tests to check fetching roles works correctly Fix linting and typing issues in the following files: * gn3/auth/authentication/oauth2/resource_server.py * gn3/auth/authentication/oauth2/views.py * tests/unit/auth/fixtures/oauth2_client_fixtures.py Frederick Muriuki Muriithi
2022-12-12auth: functions to get user resources...* gn3/auth/authorisation/resources.py: add function to get the resources that the user has access to. Frederick Muriuki Muriithi
2022-12-12auth: Add a way to check whether a user is a group leader...* gn3/auth/authorisation/groups.py: Add `is_group_leader` function Frederick Muriuki Muriithi
2022-12-12auth: pass cursor object to `user_group` functionFrederick Muriuki Muriithi
2022-12-12auth: Attach group to GroupRole, rather than group_idFrederick Muriuki Muriithi
2022-12-08auth: test for `user_resources` function (incomplete)...* gn3/auth/authorisation/resources.py: dummy `user_resources` function * tests/unit/auth/conftest.py: (incomplete): Add some fixtures for testing the `user_resources` function * tests/unit/auth/test_resources.py: test the `user_resources` function Frederick Muriuki Muriithi
2022-12-08tests: Fix issues caught by tests...The addition of the `public` field in the `resources` table, led to some previously passing tests to fail. This commit fixes the failures, and cleans up some pylint issues. * gn3/auth/authorisation/resources.py: add `public` to db queries * tests/unit/auth/test_groups.py: fix pylint issues Frederick Muriuki Muriithi
2022-12-08auth: add test to retrieve public resources...* gn3/auth/authorisation/resources.py: new functions * resource_categories: retrieves all resource categories * public_resources: retrieves all public resources * tests/unit/auth/test_resources.py: test `public_resources` function Frederick Muriuki Muriithi
2022-12-08auth: add function to retrieve a user's group...* gn3/auth/authorisation/groups.py: new `user_group` function * tests/unit/auth/test_groups.py: test `user_group` function Frederick Muriuki Muriithi
2022-11-24auth: Check for authentication and fix errors...* gn3/auth/authorisation/groups.py: base `MembershipError` on new `AuthorisationError` base exception. Use new authentication checking decorator. * gn3/auth/authorisation/privileges.py: Change argument to User object rather than UUID object * gn3/auth/authorisation/roles.py: Use new authentication checking decorator. * tests/unit/auth/test_groups.py: use `conftest.TEST_USER` * tests/unit/auth/test_privileges.py: use `conftest.TEST_USER` * tests/unit/auth/test_roles.py: use `conftest.TEST_USER` Frederick Muriuki Muriithi
2022-11-24auth: Implement `create_resource` function...* gn3/auth/authentication/checks.py: new `authenticated_p` decorator to apply on any function that requires the user to be authenticated before it runs. * gn3/auth/authorisation/checks.py: use a `auth.authentication.users.User` object rather than a UUID object in the global `g`. * gn3/auth/authorisation/groups.py: Implement the `authenticated_user_group` function to get the group(s) in which the currently authenticated user belongs. * gn3/auth/authorisation/resources.py: Implement the `create_resource` function correctly. * tests/unit/auth/conftest.py: extract the User objects into a global variable for reusability with the tests. * tests/unit/auth/test_resources.py: Use global user objects from conftest in the tests. Set a User object (rather than UUID) in the global `g` variable. Frederick Muriuki Muriithi
2022-11-24auth: Define base exceptions...* gn3/auth/authentication/exceptions.py: define `AuthenticationError` * gn3/auth/authorisation/exceptions.py: define `AuthorisationError` Frederick Muriuki Muriithi