genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2023-10-10	Remove authentication from GN3	Frederick Muriuki Muriithi
	Authentication should be handled by the auth server (gn-auth) and thus, this commit removes code handling user authentication from the GN3 system.
2023-07-31	Fix typing issue	Frederick Muriuki Muriithi

2023-07-31	Fix linting and typing issues.	Frederick Muriuki Muriithi

2023-07-31	Fix bugs. Return resource without data items.	Frederick Muriuki Muriithi
	* Fix bugs introduced while attempting pagination. * Return resource object without attached data items.
2023-07-31	Paginate the resource data items.	Frederick Muriuki Muriithi

2023-05-25	Script to assign existing data to publicly-visible resources	Frederick Muriuki Muriithi
	A script to assign existing data not assigned to any group to publicly-visible resources.
2023-05-25	Set whether resource is publicly viewable on creation	Frederick Muriuki Muriithi

2023-04-25	auth: bug: Provide missing `user_editable` argument.	Frederick Muriuki Muriithi

2023-04-24	auth: Return the actual privileges for the user	Frederick Muriuki Muriithi
	Previously, the `oauth2/data/authorisation` endpoint was returning hard-coded values for the privileges assigned to the user for each resource. In this change, we rework to return the actual privileges for the user.
2023-04-21	auth: Attach linked data to specific resources.	Frederick Muriuki Muriithi

2023-04-21	auth: Fetch user group phenotypes not attached to a resource.	Frederick Muriuki Muriithi

2023-04-12	auth: Enable listing of unlinked genotype/mRNA group data.	Frederick Muriuki Muriithi

2023-03-18	oauth2: resources: toggle whether a resource is public or not	Frederick Muriuki Muriithi

2023-03-18	auth: resources: Disallow duplicate resource names.	Frederick Muriuki Muriithi

2023-03-09	auth: redis data: migrate data in redis	Frederick Muriuki Muriithi
	Implement the code to migrate the data from redis to SQLite.
2023-03-07	auth: resources: unassign roles on resource from a user.	Frederick Muriuki Muriithi

2023-03-06	auth: resources: Enable assigning a user roles on resources	Frederick Muriuki Muriithi

2023-03-06	auth: resources: Link role's group to the resource's group	Frederick Muriuki Muriithi

2023-03-06	auth: resources: Get all users with access to a particular resource.	Frederick Muriuki Muriithi

2023-02-28	auth: Unlink data from resourcesdata-access-levels-endpoint	Frederick Muriuki Muriithi
	Enable the data editor to unlink data from a particular resource.
2023-02-28	auth: Unlink data from resources	Frederick Muriuki Muriithi
	Enable the data editor to unlink data from a particular resource.
2023-02-27	auth: Endpoint to get access levels for data	Frederick Muriuki Muriithi
	When the endpoint is accessed with a list of traits, it should/will respond with the access privileges for each of the traits attached for the active user.
2023-02-24	auth: resources: Fix query for data not linked to resources	Frederick Muriuki Muriithi

2023-02-24	auth: resources: Fix queries loading resources data.	Frederick Muriuki Muriithi

2023-02-24	auth: resources: Link data to resources.	Frederick Muriuki Muriithi

2023-02-23	auth: Link data in MySQL to the groups (in SQLite)	Frederick Muriuki Muriithi
	In order for the group leaders (and other resource creators) to be able to link data to the resources, the data needs to be first linked to the relevant group. This commit enables the system admin to link the data in MySQL to the groups.
2023-02-22	auth: List data not linked to any group.	Frederick Muriuki Muriithi

2023-02-21	auth: resources: Attach resource data and list unlinked data.	Frederick Muriuki Muriithi
	Load the data that is attached to a particular resource together with the resource. List any unlinked data: useful when linking data to resources.
2023-02-06	auth: resource: Enable viewing the details of a resource.	Frederick Muriuki Muriithi

2023-02-03	oauth: enable resource creation	Frederick Muriuki Muriithi

2023-02-02	auth: Improve authorisation	Frederick Muriuki Muriithi
	Retrieve the token, and user in the authorisation decorator to enable checking of privileges.
2023-02-02	auth: Reorganise modules/packages for easier dev and maintenance	Frederick Muriuki Muriithi
	Split the views/routes into separate modules each dealing with a narrower scope of the application to aid in maintenance, and help with making the development easier.