genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2023-10-10	Remove authentication from GN3	Frederick Muriuki Muriithi
	Authentication should be handled by the auth server (gn-auth) and thus, this commit removes code handling user authentication from the GN3 system.
2023-07-31	Fix linting and typing issues.	Frederick Muriuki Muriithi

2023-07-31	Fix bugs. Return resource without data items.	Frederick Muriuki Muriithi
	* Fix bugs introduced while attempting pagination. * Return resource object without attached data items.
2023-07-31	Paginate the resource data items.	Frederick Muriuki Muriithi

2023-05-25	Script to assign existing data to publicly-visible resources	Frederick Muriuki Muriithi
	A script to assign existing data not assigned to any group to publicly-visible resources.
2023-05-25	Set whether resource is publicly viewable on creation	Frederick Muriuki Muriithi

2023-04-24	auth: Return the actual privileges for the user	Frederick Muriuki Muriithi
	Previously, the `oauth2/data/authorisation` endpoint was returning hard-coded values for the privileges assigned to the user for each resource. In this change, we rework to return the actual privileges for the user.
2023-04-21	auth: Attach linked data to specific resources.	Frederick Muriuki Muriithi

2023-04-21	auth: Fetch user group phenotypes not attached to a resource.	Frederick Muriuki Muriithi

2023-04-12	auth: Enable listing of unlinked genotype/mRNA group data.	Frederick Muriuki Muriithi

2023-03-18	oauth2: resources: toggle whether a resource is public or not	Frederick Muriuki Muriithi

2023-03-09	auth: redis data: migrate data in redis	Frederick Muriuki Muriithi
	Implement the code to migrate the data from redis to SQLite.
2023-03-07	auth: resources: unassign roles on resource from a user.	Frederick Muriuki Muriithi

2023-03-06	auth: resources: Enable assigning a user roles on resources	Frederick Muriuki Muriithi

2023-02-28	auth: Unlink data from resourcesdata-access-levels-endpoint	Frederick Muriuki Muriithi
	Enable the data editor to unlink data from a particular resource.
2023-02-28	auth: Unlink data from resources	Frederick Muriuki Muriithi
	Enable the data editor to unlink data from a particular resource.
2023-02-27	auth: Endpoint to get access levels for data	Frederick Muriuki Muriithi
	When the endpoint is accessed with a list of traits, it should/will respond with the access privileges for each of the traits attached for the active user.
2023-02-24	auth: resources: Fix query for data not linked to resources	Frederick Muriuki Muriithi

2023-02-24	auth: resources: Fix queries loading resources data.	Frederick Muriuki Muriithi

2023-02-24	auth: resources: Link data to resources.	Frederick Muriuki Muriithi

2023-02-21	auth: resources: Attach resource data and list unlinked data.	Frederick Muriuki Muriithi
	Load the data that is attached to a particular resource together with the resource. List any unlinked data: useful when linking data to resources.
2023-02-06	auth: resource: Enable viewing the details of a resource.	Frederick Muriuki Muriithi

2023-02-03	oauth: enable resource creation	Frederick Muriuki Muriithi

2023-02-02	auth: Improve authorisation	Frederick Muriuki Muriithi
	Retrieve the token, and user in the authorisation decorator to enable checking of privileges.
2023-02-02	auth: Reorganise modules/packages for easier dev and maintenance	Frederick Muriuki Muriithi
	Split the views/routes into separate modules each dealing with a narrower scope of the application to aid in maintenance, and help with making the development easier.