genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2023-04-24	auth: Return the actual privileges for the user	Frederick Muriuki Muriithi
	Previously, the `oauth2/data/authorisation` endpoint was returning hard-coded values for the privileges assigned to the user for each resource. In this change, we rework to return the actual privileges for the user.
2023-04-19	oauth2: Link the phenotype traits to user groups.	Frederick Muriuki Muriithi

2023-04-19	auth: Setup selected traits correctly	Frederick Muriuki Muriithi
	Fix bugs with setting up of the selected traits for use while filtering the search results.
2023-04-19	auth: phenotypes - provide default empty list for selected traits.	Frederick Muriuki Muriithi

2023-04-18	auth: Pass `--per-page` and `--selected` options.	Frederick Muriuki Muriithi

2023-04-17	Hook up code to use external search script for phenotypes	Frederick Muriuki Muriithi

2023-04-17	auth: Delete code that is no longer used	Frederick Muriuki Muriithi

2023-04-15	Decouple `gn3.db_utils` from `flask.current_app`.	Frederick Muriuki Muriithi
	Decouple the `gn3.db_utils` module from the global `flask.current_app` object, ensuring that the database uri value is passed in as a required argument to the `gn3.db_utils.database_connection` function.
2023-04-10	Add search and link for mRNA Assay datasets.	Frederick Muriuki Muriithi

2023-04-10	Update expected request key.	Frederick Muriuki Muriithi

2023-04-10	Enable search, filtering out selected, but not linked data	Frederick Muriuki Muriithi
	When a user selects some datasets and does a new search, we filter out the selected datasets too, even though they are yet to be linked.
2023-04-08	auth: Link genotype datasets to groups.	Frederick Muriuki Muriithi

2023-04-04	auth: Search for linking genotype datasets.	Frederick Muriuki Muriithi

2023-03-23	auth: list the species in the database.	Frederick Muriuki Muriithi

2023-03-15	auth: Data Migrations: Rework migration trigger	Frederick Muriuki Muriithi
	Rework the migration trigger endpoint such that it does a bulk import of all the resources in the redis store. It also expects that the user that triggers the migration have the appropriate privileges.
2023-03-14	auth: Fix some linting and typing issues.	Frederick Muriuki Muriithi

2023-03-13	oauth2: data: Temporarily escalate privileges to enable migration	Frederick Muriuki Muriithi
	The functions that fetch the unlinked data have checks to ensure they are called by users with the appropriate privileges. This commit enables a temporary escalation of privileges to enable fetching the data, so as to allow successful data migration.
2023-03-13	auth: separate user detail migration from data migration	Frederick Muriuki Muriithi
	Due to the fact that the data migration requires higher privileges than the user details, separate the user details migration endpoint from the data migrations endpoint.
2023-03-10	auth: data-migration: Fix minor bugs	Frederick Muriuki Muriithi

2023-03-09	auth: redis data: migrate data in redis	Frederick Muriuki Muriithi
	Implement the code to migrate the data from redis to SQLite.
2023-03-09	auth: data migration: Data migration outline	Frederick Muriuki Muriithi
	Provide an outline of the data migration steps to be taken from some results of the experiments with the data in redis.
2023-02-28	auth: Unlink data from resourcesdata-access-levels-endpoint	Frederick Muriuki Muriithi
	Enable the data editor to unlink data from a particular resource.
2023-02-27	auth: Endpoint to get access levels for data	Frederick Muriuki Muriithi
	When the endpoint is accessed with a list of traits, it should/will respond with the access privileges for each of the traits attached for the active user.