genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2023-01-31	auth: Set the token scope as a string, not a list	Frederick Muriuki Muriithi
	Setting the scope as a list of strings was leading to errors when attempting to logout. This commit leaves the scope as a string to avoid the errors.
2023-01-21	auth: Fix saving of scope values. Add scope items.	Frederick Muriuki Muriithi

2023-01-20	mypy: minor fixes to typing errors	Frederick Muriuki Muriithi

2023-01-20	auth: Save token with update	Frederick Muriuki Muriithi
	If the token already exists, then update the details rather than trying to insert.
2023-01-20	auth: Setup the user correctly	Frederick Muriuki Muriithi
	* gn3/auth/authentication/oauth2/grants/password_grant.py: Return user rather than boolean * gn3/auth/authentication/oauth2/models/oauth2client.py: provide optional `user` argument to allow flexibility in setting up the client's user * gn3/auth/authentication/oauth2/models/oauth2token.py: Set token and client user correctly * gn3/auth/authentication/oauth2/server.py: Set token user from the request
2023-01-20	auth: Add development utils/tools	Frederick Muriuki Muriithi
	To avoid having to manually rebuild some default data for exploration of concepts while developing the system, add a way to build up the test users and oauth2 clients to use for testing.
2022-12-22	auth: implement OAuth2 flow.oauth2_auth_flow	Frederick Muriuki Muriithi
	Add code to implement the OAuth2 flow. * Add test fixtures for setting up users and OAuth2 clients * Add tests for token generation with the "Password Grant" flow * Fix some issues with test due to changes in the database connection's row_factory