| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-04-22 | Auto-pep8 files. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Reduce arguments in run_async_cmd by using options dictionary. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-08 | Pass application log-level to the worker. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Use computed job queue to avoid collisions. | Frederick Muriuki Muriithi | |
| 2025-04-08 | feat: Append GN3 computation completion marker to log file. | Alexander_Kabui | |
| 2025-03-07 | Revert "fix: Replace file path fetching code in rqtl2.py with ↵ | Munyoki Kilyungi | |
| current_app.root_path" This reverts commit e7baf1a4cf05a4e7794a6531c92d367fcd8f1651. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-04 | fix: Replace file path fetching code in rqtl2.py with current_app.root_path | Munyoki Kilyungi (aider) | |
| 2025-02-28 | Fix issues caught by mypy. | Frederick Muriuki Muriithi | |
| 2025-02-28 | Fix linting errors. | Frederick Muriuki Muriithi | |
| 2025-02-21 | Fix versioning of WIKI entries. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py (edit_wiki)[next_version]: Set to the latest+1 if a comment id exists. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-02-19 | fix: Read and parse correct permutation file from R/qtl1 | Alexander_Kabui | |
| 2025-02-10 | feat: Add LMDB sample data retrieval API endpoint with tests | Munyoki Kilyungi (aider) | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-02-07 | feat: Enable streaming functionality for rqtl2. | Alexander_Kabui | |
| 2025-02-06 | refactor: code refactoring. | Alexander_Kabui | |
| 2025-02-06 | refactor: Rename pheno_map to physical_map . | Alexander_Kabui | |
| 2025-02-06 | feat: Add functionality to process output to compute endpoint. | Alexander_Kabui | |
| 2025-02-06 | Minor fix. | Alexander_Kabui | |
| 2025-02-06 | refactor: Minor cleanup. | Alexander_Kabui | |
| 2025-02-06 | refactor: Refactor compute endpoint for rqtl2. | Alexander_Kabui | |
| 2025-01-21 | Enable new inserts of new wiki entries. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Import Optional (edit_wiki): Add "/edit" route. Add new comment id. * gn3/db/wiki.py (get_next_comment_id): New function for fetching the getting the next comment_id. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-09 | Minor typo fix. | Alexander_Kabui | |
| 2025-01-09 | Minor fix. | Alexander_Kabui | |
| 2025-01-09 | feat: Add a decorator function to enable streaming functinality. | Alexander_Kabui | |
| 2025-01-09 | fix: pylint fix. | Alexander_Kabui | |
| 2025-01-09 | refactor: remove obsolete streaming endpoint. | Alexander_Kabui | |
| 2025-01-09 | refactor: enhance docstring for streaming endpoint. | Alexander_Kabui | |
| 2025-01-09 | feat: Add and register streaming blueprint. | Alexander_Kabui | |
| 2025-01-09 | feat: Add streaming main endpoint. | Alexander_Kabui | |
| 2025-01-09 | feat: Init add module for streaming api endpoins. | Alexander_Kabui | |
| 2025-01-09 | refactor: import streaming functionality from module. | Alexander_Kabui | |
| 2025-01-08 | refactor: Modify error message for run_process function. | Alexander_Kabui | |
| 2025-01-08 | refactor: Return results as dict with correct metadata for subprocess. | Alexander_Kabui | |
| 2025-01-08 | refactor: Pass arg commands to subprocess as a list. | Alexander_Kabui | |
| * Use with open context for subprocess. * Correctly handle subprocess error. | |||
| 2025-01-07 | feat: Revert commit 688d6a4. | Alexander_Kabui | |
| 2025-01-07 | feat: remove shell True to for debug. | Alexander_Kabui | |
| 2024-12-20 | Add todo note for writing rqtl file. | Alexander_Kabui | |
| 2024-12-20 | fix: Pylint fixes. | Alexander_Kabui | |
| 2024-12-20 | feat: Enable streaming for output. | Alexander_Kabui | |
| 2024-12-17 | feat: Init integrate streaming functionality to rqtl1. | Alexander_Kabui | |
| 2024-12-07 | Check whether genofile/phenofile exist separately. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-12-04 | Temp disable with for test Popen processes. | Alexander_Kabui | |
| 2024-12-04 | refactor: make pylint fixes. | Alexander_Kabui | |
| 2024-11-28 | feat: define general endpoint for streaming stdout using unique identifier. | Alexander_Kabui | |
| 2024-11-27 | feat: return run id for compute and streaming api's. | Alexander_Kabui | |
| 2024-11-26 | feat: Implement reading from file functionality | Alexander_Kabui | |
| Implement read from the last position for a file. | |||
| 2024-11-22 | feat: return pointer position from where the file was last read. | Alexander_Kabui | |
| 2024-11-22 | feat: Add new endpoint to read stdout given a file identifier. | Alexander_Kabui | |
| 2024-11-22 | feat: implement ednpoint for computing qtl using rqtl2. | Alexander_Kabui | |
| Capture stdout results to a file. | |||
| 2024-10-18 | refactor: replace gn3.auth.db with gn3.sqlite_db_utils and drop all refs to ↵ | John Nduli | |
| gn3.auth | |||
| 2024-10-18 | refactor: move definition of auth errs and remove auth cli utils | John Nduli | |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
| about summary refs log tree commit diff |