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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2021-03-08
Replace "compute_k_values" with "generate_gemma_cmd"
BonfaceKilz
2021-03-08
Use new "compute_k_values" procedure
BonfaceKilz
2021-03-08
Add generic fn for computing k and gwa values
BonfaceKilz
2021-03-08
Apply pep-8 formatting
...
Began using elpy's format code fn
BonfaceKilz
2021-03-08
Add new endpoint
...
"/gwa-compute/<k_filename>/loco/covariates/maf/<maf>/<token>"
BonfaceKilz
2021-03-08
Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/<k_filename>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gemma/k-compute/<token>"
...
* gn3/api/gemma.py (compute_k): New function. * tests/integration/test_gemma.py (tesk_k_compute): New test case.
BonfaceKilz
2021-03-08
Replace APP_DEFAULTS dict with actual conf params
BonfaceKilz
2021-03-08
Use new extract_uploaded_file fn when uploading metadata
...
* gn3/api/general.py (upload_metadata): Update docstrings and update the use of "extract_uploaded_file" fn.
BonfaceKilz
2021-03-08
Fix failing tests
BonfaceKilz
2021-03-08
Add extra endpoint for checking the status of a command
BonfaceKilz
2021-03-08
Make the name of the redis job queue configurable
BonfaceKilz
2021-02-24
Rename "/gemma/run" to "/gemma/k-gwa-computation"
BonfaceKilz
2021-02-24
Update how gemma(extracted from gn2) is computed
BonfaceKilz
2021-02-24
Add endpoint for running GEMMA
BonfaceKilz
2021-02-24
Delete unnececessary gemma endpoints
BonfaceKilz
2021-02-24
Remove test "/gemma" stub
BonfaceKilz
2021-02-24
gn3: api: gemma: Add endpoint for checking gemma-wrapper version
BonfaceKilz
2021-02-24
Add stubbed gemma endpoints
BonfaceKilz
2021-02-16
Return the correct message and status code in "/metadata/upload"
BonfaceKilz
2021-02-16
Add new endpoint for uploading data
BonfaceKilz
2021-02-16
Add basic integration tests to test out the API
BonfaceKilz
2021-02-15
Add test stubbed gemma endpoint
BonfaceKilz
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