| Age | Commit message (Expand) | Author |
|---|
| 2023-01-18 | Tolerate WEIGHT operator in parsed search queries....* gn3/api/search.py (remove_synteny_field): Tolerate WEIGHT operator in parsed
search queries.
| Arun Isaac |
| 2023-01-18 | Implement synteny search....* gn3/api/search.py: Import gzip, Path from pathlib and curry from
pymonad.tools.
(IntervalLiftoverFunction): New variable.
(query_subqueries, query_terms, field_processor_or, liftover,
liftover_interval, parse_synteny_field, is_synteny_on, remove_synteny_field):
New functions.
(parse_location_field): Generalize to support synteny searches.
(parse_query): Support synteny search queries.
(search_results): Pass synteny files directory to parse_query.
| Arun Isaac |
| 2023-01-18 | Support location shorthands in search queries....* gn3/api/search.py: Import partial and reduce from functools. Import Callable
from typing.
(ChromosomalPosition, ChromosomalInterval, FieldProcessor): New classes.
(apply_si_suffix, combine_queries, parse_location_field, interval_start,
interval_end): New functions.
(parse_query): Add field processors for location shorthands.
| Arun Isaac |
| 2023-01-18 | Split off search query parsing into separate function....* gn3/api/search.py (parse_query): New function.
(search_results): Use parse_query.
| Arun Isaac |
| 2022-10-28 | Use Xapian index path from app settings....App settings should be accessed from current_app. It should not be hard-coded
to a variable in a module.
* gn3/db_utils.py: Do not import XAPIAN_DB_PATH from gn3.settings.
(xapian_database): Accept path argument.
* gn3/api/search.py: Import current_app from flask.
(search_results): Pass Xapian index path to xapian_database.
| Arun Isaac |
| 2022-10-28 | Add search....* gn3/api/search.py: New file.
* gn3/app.py: Register the search blueprint.
| Arun Isaac |
