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path: root/gn3/api/metadata.py
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2023-03-01Create API endpoint for fetching trait metadata...* gn3/api/metadata.py (dataset_metadata): New function and endpoint. (jsonify_dataset_metadata): Rename to dataset_metadata. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2022-12-06Use a dataset's name to fetch it's metadata from RDF...* gn3/api/metadata.py (jsonify_dataset_metadata): Rewrite metadata end-point to use a dataset's name instead of it's accession_id. * gn3/db/rdf.py (get_dataset_metadata): Replace accession_id with name. Use one single RDF query instead of multiple queries. Munyoki Kilyungi
2022-11-28Catch a URLError when virtuoso isn't running at all...* gn3/api/metadata.py: Import URLError. (jsonify_dataset_metadata): Add URLError in except block. Munyoki Kilyungi
2022-11-28Fix pylint errors...* gn3/api/general.py: Delete rdf import. Delete trailing white spaces. * gn3/api/metadata.py: Delete trailing white spaces. Munyoki Kilyungi
2022-11-28Fail gracefully when virtuoso is not accessible...* gn3/api/metadata.py: import RemoteDisconnected. (jsonify_dataset_metadata): Wrap get_dataset_metadata in try block. Munyoki Kilyungi
2022-11-23Create a new REST endpoint for fetching a phenotype's metadata...* gn3/api/general.py: (dataset_metadata) Delete. * gn3/api/metadata.py: Import Blueprint, jsonify, current_app, SPARQLWrapper and get_dataset_metadata. (metadata): New Blueprint (jsonify_dataset_metadata): New function/end-point. * gn3/app.py: Import metadata (create_app): Register metadata blueprint. Munyoki Kilyungi