Age | Commit message (Expand) | Author |
---|---|---|
2022-11-02 | Re-implement RDF related code to use monads in its own module...* gn3/api/general.py: Replace gn3.db.datasets import with gn3.db.rdf. (dataset_metadata) <jsonify>: Replace datasets.dataset_metadata with rdf.get_dataset_metadata. * gn3/db/datasets.py: Remove unused imports. (sparql_query, dataset_metadata): Delete. * gn3/db/rdf.py: (sparql_query, get_dataset_metadata): New functions. | Munyoki Kilyungi |
2021-12-02 | Implement dataset metadata API endpoint....* guix.scm: Import (gnu packages rdf). (genenetwork3)[propagated-inputs]: Add python-sparqlwrapper. * gn3/settings.py (SPARQL_ENDPOINT): New variable. * gn3/api/general.py: Import datasets from gn3.db. (dataset_metadata): New API endpoint. * gn3/db/datasets.py: Import re, Template from string, Dict and Optional from typing, JSON and SPARQLWrapper from SPARQLWrapper, SPARQL_ENDPOINT from gn3.settings. (sparql_query, dataset_metadata): New functions. | Arun Isaac |
2021-08-18 | Fix obvious linting errors...* Fix linting errors that do not change the function of the code. | Muriithi Frederick Muriuki |
2021-08-07 | Add gunicorn support for production | Pjotr Prins |
2021-05-13 | Add end-point for running an rQTL program...* gn3/api/general.py (run_r_qtl): New function. * gn3/settings.py: New variable. | BonfaceKilz |
2021-05-13 | Rename file_utils to fs_helpers...Generally avoid naming things with a "utils" prefix/ suffix since it encourages contributors to dump any new functions there; and over time, as the code grows, things get messy... | BonfaceKilz |
2021-03-10 | Add extra endpoint for when TOKEN isn't provided | BonfaceKilz |
2021-03-08 | Replace APP_DEFAULTS dict with actual conf params | BonfaceKilz |
2021-03-08 | Use new extract_uploaded_file fn when uploading metadata...* gn3/api/general.py (upload_metadata): Update docstrings and update the use of "extract_uploaded_file" fn. | BonfaceKilz |
2021-02-16 | Return the correct message and status code in "/metadata/upload" | BonfaceKilz |
2021-02-16 | Add new endpoint for uploading data | BonfaceKilz |