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path: root/gn3/api/gemma.py
AgeCommit message (Collapse)Author
2024-09-12Move assert_paths_exist into fs_helpersPjotr Prins
2024-09-12Change behavior of do_paths_exist to actually throw useful errorPjotr Prins
2021-05-13Rename file_utils to fs_helpersBonfaceKilz
Generally avoid naming things with a "utils" prefix/ suffix since it encourages contributors to dump any new functions there; and over time, as the code grows, things get messy...
2021-03-23Use ipfs to get genotype filesBonfaceKilz
2021-03-23Apply auto-pep8 formattingBonfaceKilz
2021-03-10Rename "covariates" to "covars" in endpoints for consistencyBonfaceKilz
2021-03-08Remove unused importsBonfaceKilz
2021-03-08Remove "/k-gwa-computation"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
Reviewed-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-03-08Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/<token>"BonfaceKilz
2021-03-08Replace "compute_k_values" with "generate_gemma_cmd"BonfaceKilz
2021-03-08Use new "compute_k_values" procedureBonfaceKilz
2021-03-08Add generic fn for computing k and gwa valuesBonfaceKilz
2021-03-08Apply pep-8 formattingBonfaceKilz
Began using elpy's format code fn
2021-03-08Add new endpointBonfaceKilz
"/gwa-compute/<k_filename>/loco/covariates/maf/<maf>/<token>"
2021-03-08Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/<token>"BonfaceKilz
* gn3/api/gemma.py (compute_k): New function. * tests/integration/test_gemma.py (tesk_k_compute): New test case.
2021-03-08Replace APP_DEFAULTS dict with actual conf paramsBonfaceKilz
2021-03-08Fix failing testsBonfaceKilz
2021-03-08Add extra endpoint for checking the status of a commandBonfaceKilz
2021-03-08Make the name of the redis job queue configurableBonfaceKilz
2021-02-24Rename "/gemma/run" to "/gemma/k-gwa-computation"BonfaceKilz
2021-02-24Update how gemma(extracted from gn2) is computedBonfaceKilz
2021-02-24Add endpoint for running GEMMABonfaceKilz
2021-02-24Delete unnececessary gemma endpointsBonfaceKilz
2021-02-24Remove test "/gemma" stubBonfaceKilz
2021-02-24gn3: api: gemma: Add endpoint for checking gemma-wrapper versionBonfaceKilz
2021-02-24Add stubbed gemma endpointsBonfaceKilz
2021-02-16Add basic integration tests to test out the APIBonfaceKilz
2021-02-15Add test stubbed gemma endpointBonfaceKilz
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-25 19:50:43 +0000