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2025-01-09refactor: import streaming functionality from module.Alexander_Kabui
2025-01-09feat: Add function to run an external process and capture result in a file.Alexander_Kabui
2025-01-09feat: Init add streaming module for genenetwork3.Alexander_Kabui
2025-01-08refactor: Modify error message for run_process function.Alexander_Kabui
2025-01-08refactor: Return results as dict with correct metadata for subprocess.Alexander_Kabui
2025-01-08refactor: Pass arg commands to subprocess as a list.Alexander_Kabui
2025-01-07feat: Revert commit 688d6a4.Alexander_Kabui
2025-01-07feat: remove shell True to for debug.Alexander_Kabui
2025-01-06feat: Add print statements for start and end of qtl script run.Alexander_Kabui
2025-01-02Revert "Add missing commas to make `install_requires` a list of packages."Frederick Muriuki Muriithi
2025-01-02Revert "DEBUG: Guix build failure at `sanity-check` phase."Frederick Muriuki Muriithi
2025-01-02DEBUG: Guix build failure at `sanity-check` phase.Frederick Muriuki Muriithi
2025-01-02Add pytest-mock to list of dependencies for tests.Frederick Muriuki Muriithi
2025-01-02Install any JSON files under the `gn3` package.Frederick Muriuki Muriithi
2025-01-02Add missing commas to make `install_requires` a list of packages.Frederick Muriuki Muriithi
2024-12-20Add todo note for writing rqtl file.Alexander_Kabui
2024-12-20Merge pull request #205 from genenetwork/feature/integrate-streaming-api-func...Alexander Kabui
2024-12-20fix: Pylint fixes.Alexander_Kabui
2024-12-20feat: Enable streaming for output.Alexander_Kabui
2024-12-20feat: Enable verbose for script by default.Alexander_Kabui
2024-12-17feat: Init integrate streaming functionality to rqtl1.Alexander_Kabui
2024-12-13fix: Fix unused variables pylint.Alexander_Kabui
2024-12-13Fix pylint error line too long.Alexander_Kabui
2024-12-13fix: Fetch the correct value from rqtl output file for permutation.Alexander_Kabui
2024-12-12Remove quote marks for qtl output.Munyoki Kilyungi
2024-12-12Fetch RSCRIPT command from global environment variable.Munyoki Kilyungi
2024-12-07Check whether genofile/phenofile exist separately.Munyoki Kilyungi
2024-12-04Temp disable with for test Popen processes.Alexander_Kabui
2024-12-04refactor: make pylint fixes.Alexander_Kabui
2024-12-04Merge pull request #203 from genenetwork/feature/rqtl2-endpoints-with-filesAlexander Kabui
2024-12-02Fix probeset metadata query to include dataset namezsloan
2024-11-28feat: define general endpoint for streaming stdout using unique identifier.Alexander_Kabui
2024-11-27feat: return run id for compute and streaming api's.Alexander_Kabui
2024-11-26feat: Implement reading from file functionalityAlexander_Kabui
2024-11-22feat: return pointer position from where the file was last read.Alexander_Kabui
2024-11-22feat: Add new endpoint to read stdout given a file identifier.Alexander_Kabui
2024-11-22feat: register rqtl2 blueprint to app.Alexander_Kabui
2024-11-22feat: implement ednpoint for computing qtl using rqtl2.Alexander_Kabui
2024-11-20Merge pull request #201 from genenetwork/feature/rqtl2-implementationAlexander Kabui
2024-11-15Fix bug where case attribute editing didn't work if a case attribute waszsloan
2024-11-14Fix auth endpoint for case attribute editingzsloan
2024-11-14Fix case attribute queryzsloan
2024-11-12Remove unused setting.Frederick Muriuki Muriithi
2024-11-12Remove unused import.Frederick Muriuki Muriithi
2024-11-12mypy: Rename and annotate variables to silence mypyFrederick Muriuki Muriithi
2024-11-12Pure aesthetics: No functional change.Frederick Muriuki Muriithi
2024-11-11Allow extra database connection options on URIFrederick Muriuki Muriithi
2024-11-11feat: add step to insert pseudomarkers to the gmap.Alexander_Kabui
2024-11-11fix: fix issue fetching covar:Alexander_Kabui
2024-11-11refactor: rename dataset to cross.Alexander_Kabui