genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2021-05-26	db: phenotypes: Fix typo	BonfaceKilz
2021-05-25	Include code that processes rqtl output files and returns actual results inst...	zsloan
2021-05-20	tests: test_phenotype: Add function that tests "fetchone"	BonfaceKilz
2021-05-20	db: phenotypes: Add function for fetching a single result...* gn3/db/phenotypes.py (fetchone): New function.	BonfaceKilz
2021-05-20	db: phenotypes: Add a dataclass map...Maps a string to it's dataclass.	BonfaceKilz
2021-05-20	db: phenotypes: Add Publication table mapping	BonfaceKilz
2021-05-20	db: phenotypes: Rename phenotype_column_mapping	BonfaceKilz
2021-05-20	db: phenotypes: Add Publication dataclass and mapping	BonfaceKilz
2021-05-20	db: phenotypes: Update failing tests	BonfaceKilz
2021-05-20	db: phenotypes: Generalise the update function...* gn3/db/phenotypes.py (update_phenotype): Delete it. (update): New, more general function.	BonfaceKilz
2021-05-20	db: phenotypes: Map a table to it's relevant dict mapping	BonfaceKilz
2021-05-20	db: phenotypes: Add type for Dataclass...See: https://www.py4u.net/discuss/188952	BonfaceKilz
2021-05-20	db: phenotypes: Put mapping def after dataclass	BonfaceKilz
2021-05-20	db: phenotypes: Add phenotype table mapping	BonfaceKilz
2021-05-20	db: phenotypes: Add dataclass to represent PublishXRef	BonfaceKilz
2021-05-20	db: phenotype: Make "pylint: disable=[R0902]" global for file	BonfaceKilz
2021-05-20	tests: test_phenotypes: New test cases for loading phenotypes	BonfaceKilz
2021-05-20	db: phenotypes: Add a way of updating the Phenotype table...* gn3/db/phenotypes.py (Phenotype): New dataclass. (update_phenotype): New function. [phenotype_column_mapping]: New variable.	BonfaceKilz
2021-05-19	Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into featu...	zsloan
2021-05-19	Add r-optparse to guix.scm	Pjotr Prins
2021-05-19	Temporarily replace forward-slashes with underscores, since they can be inclu...	zsloan
2021-05-19	Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into featu...	zsloan
2021-05-19	Added R and r-qtl	Pjotr Prins
2021-05-19	More SQL optimization trials	Pjotr Prins
2021-05-19	Fix SQL query	Pjotr Prins
2021-05-19	SQL query gives different result	Pjotr Prins
2021-05-19	New SQL approach	Pjotr Prins
2021-05-18	Added test for compose_rqtl_cmd in tests/unit/test_commands.py	zsloan
2021-05-18	Removed len from this if statement, since an empty list evaluates to False by...	zsloan
2021-05-18	Added unit test for computations/rqtl.py	zsloan
2021-05-18	Account for boolean kwargs in compute() by storing them in a list, since they...	zsloan
2021-05-18	Account for boolean kwargs in compose_rqtl_cmd	zsloan
2021-05-18	Fixed generate_rqtl_cmd to make the kwarg hash from a combination of keywords...	zsloan
2021-05-18	Slow SQL: add note	Pjotr Prins
2021-05-18	Add original SQL query	Pjotr Prins
2021-05-18	Notes on SQL query	Pjotr Prins
2021-05-18	Fixed variety of issues detected by pylint	zsloan
2021-05-17	Created compose_rqtl_command and generate_rqtl_command to create the actual c...	zsloan
2021-05-17	Read in kwargs fromrequest and pass the command, tmpdir, and kwargs to genera...	zsloan
2021-05-17	Added RQTL_WRAPPER_CMD (which is fetched from environment) in settings.py	zsloan
2021-05-17	Add rqtl.py for rqtl endpoints	zsloan
2021-05-17	Register rqtl blueprint	zsloan
2021-05-17	Merge pull request #11 from genenetwork/feature/minor-fixes...Feature/minor fixes	BonfaceKilz
2021-05-15	resolve merge conflict	Alexander Kabui
2021-05-15	Merge branch 'main' into feature/minor-fixes	Alexander Kabui
2021-05-15	index lit tuple result	Alexander Kabui
2021-05-14	README	Pjotr Prins
2021-05-13	tests: test_general: Add test case for run_r_qtl endpoint	BonfaceKilz
2021-05-13	Add end-point for running an rQTL program...* gn3/api/general.py (run_r_qtl): New function. * gn3/settings.py: New variable.	BonfaceKilz
2021-05-13	Rename file_utils to fs_helpers...Generally avoid naming things with a "utils" prefix/ suffix since it encourages contributors to dump any new functions there; and over time, as the code grows, things get messy...	BonfaceKilz