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2024-09-27Fix Pair-Scan output pathsFrederick Muriuki Muriithi
2024-09-27Set `include_package_data=True` to install R files too.Frederick Muriuki Muriithi
2024-09-27Add a MANIFEST.in to include R scripts.Frederick Muriuki Muriithi
2024-09-27Bug: Use absolute path in place of relative pathFrederick Muriuki Muriithi
2024-09-27Use existing fixture to retrieve settings.Frederick Muriuki Muriithi
2024-09-27Fix R/qtl output pathszsloan
2024-09-23Revert "Add pytest.mark.unit_test for all rdf test-cases."Munyoki Kilyungi
2024-09-23Add pytest.mark.unit_test for all rdf test-cases.Munyoki Kilyungi
2024-09-23Handle missing GN3_SECRETS for CI testing.Munyoki Kilyungi
2024-09-23Fix or ignore pylint errors.Munyoki Kilyungi
2024-09-23Revert "Remove one-line if/else statement."Munyoki Kilyungi
2024-09-23Add section on setting up virtuoso locally.Munyoki Kilyungi
2024-09-23Update docs to use default virtuoso ports.Munyoki Kilyungi
2024-09-23Update docs on how to use SPARQL default ports.Munyoki Kilyungi
2024-09-23Remove one-line if/else statement.Munyoki Kilyungi
2024-09-23Load GN3_SECRETS after loading GN3_CONF settings.Munyoki Kilyungi
2024-09-23Remove dead comment.Munyoki Kilyungi
2024-09-23Make sure the the test graph is empty before running rdf tests.Munyoki Kilyungi
2024-09-23Update docs to highlight sparql conf params in SECRETS file.Munyoki Kilyungi
2024-09-23Use correct object modifier for a label when inserting a comment.Munyoki Kilyungi
2024-09-23Update docstring for "update_wiki_comment".Munyoki Kilyungi
2024-09-23Use correct object modifier in triple when fetching comment history.Munyoki Kilyungi
2024-09-23Use test fixtures to set-up a test named graph.Munyoki Kilyungi
2024-09-23Add RDF test cases.Munyoki Kilyungi
2024-09-23Use correct modifier when getting species name in SPARQL.Munyoki Kilyungi
2024-09-23Remove dead variable from RDF query.Munyoki Kilyungi
2024-09-23Alphabetically sort the categories and pubmed_ids array.Munyoki Kilyungi
2024-09-23Remove un-necessary triple in comment history RDF query.Munyoki Kilyungi
2024-09-19Use correct return type.Munyoki Kilyungi
2024-09-19Remove extraneous keyword.Munyoki Kilyungi
2024-09-18Pass in insert_dict instead of payload in "get_wiki_entries".Munyoki Kilyungi
2024-09-18Pass in the createtime as an arg when inserting into RDF graph.Munyoki Kilyungi
2024-09-18Get the next versionId from SQL.Munyoki Kilyungi
2024-09-18Update docs with extra conf vars for updating virtuoso.Munyoki Kilyungi
2024-09-18Update "POST /wiki/comment_id/edit" to have RDF edits.Munyoki Kilyungi
2024-09-18Fix typo.Munyoki Kilyungi
2024-09-18Add method that inserts new RIF comments.Munyoki Kilyungi
2024-09-18Fetch symbol by it's name.Munyoki Kilyungi
2024-09-18Fetch the next comment version in RDF.Munyoki Kilyungi
2024-09-18Rename sparql_construct_query -> sparql_query.Munyoki Kilyungi
2024-09-18Add new method for updating RDF Graph content.Munyoki Kilyungi
2024-09-18Run python-black against file.Munyoki Kilyungi
2024-09-17Fix C0411/C0412 pylint errors in gn3.api.metadata.api.wiki.Munyoki Kilyungi
2024-09-17fix: error when result dict contains NoneJohn Nduli
2024-09-17feat: require auth for edit api callJohn Nduli
2024-09-12Fix pylint errors.Munyoki Kilyungi
2024-09-12feat: pick results from sqlite3 if they were storedJohn Nduli
2024-09-12Initialise the package to ensure setuptools finds it.Frederick Muriuki Muriithi
2024-09-12BugFix: assign value and use variable.Frederick Muriuki Muriithi
2024-09-12Fix failing tests after merging in Pjotr's pull request.Frederick Muriuki Muriithi