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2023-04-21Setup module for loggingFrederick Muriuki Muriithi
2023-04-21auth: Fetch user group phenotypes not attached to a resource.Frederick Muriuki Muriithi
2023-04-19oauth2: Link the phenotype traits to user groups.Frederick Muriuki Muriithi
2023-04-19Fix minor linting and typing issuesFrederick Muriuki Muriithi
2023-04-19auth: Setup selected traits correctlyFrederick Muriuki Muriithi
2023-04-19auth: phenotypes - provide default empty list for selected traits.Frederick Muriuki Muriithi
2023-04-18auth: Pass `--per-page` and `--selected` options.Frederick Muriuki Muriithi
2023-04-18auth: Consistently JSON encode values.Frederick Muriuki Muriithi
2023-04-17Fix typo, os.environment -> os.environMunyoki Kilyungi
2023-04-17Update the default SPARQL endpointMunyoki Kilyungi
2023-04-17Create new endpoint for fetching GeneRIF entriesMunyoki Kilyungi
2023-04-17Hook up code to use external search script for phenotypesFrederick Muriuki Muriithi
2023-04-17auth: Delete code that is no longer usedFrederick Muriuki Muriithi
2023-04-15Decouple `gn3.db_utils` from `flask.current_app`.Frederick Muriuki Muriithi
2023-04-14auth: Add external script to search for phenotypesFrederick Muriuki Muriithi
2023-04-14auth: Disconnect module from flask applicationFrederick Muriuki Muriithi
2023-04-12auth: Enable listing of unlinked genotype/mRNA group data.Frederick Muriuki Muriithi
2023-04-10Add search and link for mRNA Assay datasets.Frederick Muriuki Muriithi
2023-04-10Migrations for linking genotype files.Frederick Muriuki Muriithi
2023-04-10Update expected request key.Frederick Muriuki Muriithi
2023-04-10Enable search, filtering out selected, but not linked dataFrederick Muriuki Muriithi
2023-04-08auth: Link genotype datasets to groups.Frederick Muriuki Muriithi
2023-04-06Fix linting issuesFrederick Muriuki Muriithi
2023-04-06Remove deprecated `gn3.db_utils.database_connector` functionFrederick Muriuki Muriithi
2023-04-05Enable use of `database_connection` in scripts without current_appFrederick Muriuki Muriithi
2023-04-04auth: Search for linking genotype datasets.Frederick Muriuki Muriithi
2023-04-04Add tables to link genotype dataFrederick Muriuki Muriithi
2023-03-23tests: Set up fixture and mock out config variableFrederick Muriuki Muriithi
2023-03-23auth: list the species in the database.Frederick Muriuki Muriithi
2023-03-23Docs: Add a note on how the configuration system works.Frederick Muriuki Muriithi
2023-03-23auth: Don't try loading the user if no client is foundFrederick Muriuki Muriithi
2023-03-23conf: use flask.current_app.config not in gn3.settingsFrederick Muriuki Muriithi
2023-03-22auth: data linking: build functions to fetch unlinked phenotypesFrederick Muriuki Muriithi
2023-03-22auth: migrations for linking phenotype dataFrederick Muriuki Muriithi
2023-03-22auth: Enable linking multiple datasets to the group at once.Frederick Muriuki Muriithi
2023-03-22auth: Remove the tables used for linking data to resourcesFrederick Muriuki Muriithi
2023-03-20Disable fetching case-attributes when getting sample dataMunyoki Kilyungi
2023-03-20auth: data: Enable offset in queriesFrederick Muriuki Muriithi
2023-03-20auth: data: List Phenotypes at the trait levelFrederick Muriuki Muriithi
2023-03-20Fix get_all_species testzsloan
2023-03-18oauth2: resources: toggle whether a resource is public or notFrederick Muriuki Muriithi
2023-03-18auth: resources: Disallow duplicate resource names.Frederick Muriuki Muriithi
2023-03-17Add conn.commit() to queries in sample_data.pyzsloan
2023-03-17Change get_all_species query to order by Familyzsloan
2023-03-15auth: Data Migrations: Rework migration triggerFrederick Muriuki Muriithi
2023-03-14auth: Fix some linting and typing issues.Frederick Muriuki Muriithi
2023-03-13Move doc to issue trackerPjotr Prins
2023-03-13oauth2: data: Temporarily escalate privileges to enable migrationFrederick Muriuki Muriithi
2023-03-13auth: separate user detail migration from data migrationFrederick Muriuki Muriithi
2023-03-13Add 'ON UPDATE/DELETE' clauses to foreign keys.Frederick Muriuki Muriithi
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