index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2023-05-18
auth: user collections: Add and/or remove traits.
Frederick Muriuki Muriithi
2023-05-17
auth: Delete collections by ID.
Frederick Muriuki Muriithi
2023-05-17
auth: Import/Delete Anonymous Collections
Frederick Muriuki Muriithi
2023-05-16
auth: View a collection by its ID.
Frederick Muriuki Muriithi
2023-05-15
collections: Move code to new package. Create new collections.
Frederick Muriuki Muriithi
2023-05-12
auth: Provide separate endpoint for anonymous collections.
Frederick Muriuki Muriithi
2023-05-11
auth: Fix bug with migration of user collections
Frederick Muriuki Muriithi
2023-05-10
auth: Add the /oauth2/user/collections/list endpoint
Frederick Muriuki Muriithi
2023-05-10
auth: Only check deliverability of emails at registration.
Frederick Muriuki Muriithi
2023-05-09
auth: Implement "Authorization Code Flow"
auth/implement-authorization-code-flow
Frederick Muriuki Muriithi
2023-04-27
auth: Retrieve `system:*` privileges from resource roles
Frederick Muriuki Muriithi
2023-04-27
auth: List also the non-resource privileges the user has
Frederick Muriuki Muriithi
2023-04-27
auth: Add authorisation checks for role editting.
Frederick Muriuki Muriithi
2023-04-27
oauth2: Provide missing `user_editable` argument.
Frederick Muriuki Muriithi
2023-04-25
auth: bug: Provide missing `user_editable` argument.
Frederick Muriuki Muriithi
2023-04-25
auth: provide `user_editable` flag in dictified output
Frederick Muriuki Muriithi
2023-04-25
auth: Roles: Check for editability
Frederick Muriuki Muriithi
2023-04-24
auth: Return the actual privileges for the user
Frederick Muriuki Muriithi
2023-04-21
logging: Set LOG LEVEL on root logger to enable logs
Frederick Muriuki Muriithi
2023-04-21
auth: Attach linked data to specific resources.
Frederick Muriuki Muriithi
2023-04-21
Setup module for logging
Frederick Muriuki Muriithi
2023-04-21
auth: Fetch user group phenotypes not attached to a resource.
Frederick Muriuki Muriithi
2023-04-19
oauth2: Link the phenotype traits to user groups.
Frederick Muriuki Muriithi
2023-04-19
Fix minor linting and typing issues
Frederick Muriuki Muriithi
2023-04-19
auth: Setup selected traits correctly
Frederick Muriuki Muriithi
2023-04-19
auth: phenotypes - provide default empty list for selected traits.
Frederick Muriuki Muriithi
2023-04-18
auth: Pass `--per-page` and `--selected` options.
Frederick Muriuki Muriithi
2023-04-18
auth: Consistently JSON encode values.
Frederick Muriuki Muriithi
2023-04-17
Fix typo, os.environment -> os.environ
Munyoki Kilyungi
2023-04-17
Update the default SPARQL endpoint
Munyoki Kilyungi
2023-04-17
Create new endpoint for fetching GeneRIF entries
Munyoki Kilyungi
2023-04-17
Hook up code to use external search script for phenotypes
Frederick Muriuki Muriithi
2023-04-17
auth: Delete code that is no longer used
Frederick Muriuki Muriithi
2023-04-15
Decouple `gn3.db_utils` from `flask.current_app`.
Frederick Muriuki Muriithi
2023-04-14
auth: Add external script to search for phenotypes
Frederick Muriuki Muriithi
2023-04-14
auth: Disconnect module from flask application
Frederick Muriuki Muriithi
2023-04-12
auth: Enable listing of unlinked genotype/mRNA group data.
Frederick Muriuki Muriithi
2023-04-10
Add search and link for mRNA Assay datasets.
Frederick Muriuki Muriithi
2023-04-10
Migrations for linking genotype files.
Frederick Muriuki Muriithi
2023-04-10
Update expected request key.
Frederick Muriuki Muriithi
2023-04-10
Enable search, filtering out selected, but not linked data
Frederick Muriuki Muriithi
2023-04-08
auth: Link genotype datasets to groups.
Frederick Muriuki Muriithi
2023-04-06
Fix linting issues
Frederick Muriuki Muriithi
2023-04-06
Remove deprecated `gn3.db_utils.database_connector` function
Frederick Muriuki Muriithi
2023-04-05
Enable use of `database_connection` in scripts without current_app
Frederick Muriuki Muriithi
2023-04-04
auth: Search for linking genotype datasets.
Frederick Muriuki Muriithi
2023-04-04
Add tables to link genotype data
Frederick Muriuki Muriithi
2023-03-23
tests: Set up fixture and mock out config variable
Frederick Muriuki Muriithi
2023-03-23
auth: list the species in the database.
Frederick Muriuki Muriithi
2023-03-23
Docs: Add a note on how the configuration system works.
Frederick Muriuki Muriithi
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