genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2024-07-12	fix: remove .py extension for addRif to prevent pylint checks	John Nduli
2024-07-12	refactor: fix mypy and pylint errors	John Nduli
2024-07-12	feat: copy addRif script from genenetwork1	John Nduli
2024-07-08	Pass output directory to R/qtl script instead of pulling it from the	zsloan
2024-07-05	fix: return query error message from xapian	John Nduli
2024-07-03	Return a "-1" if the turtle directory does not exist.	Munyoki Kilyungi
2024-07-03	Generate a checksum for all the ttl files.	Munyoki Kilyungi
2024-07-03	Add type-hints to hash_generif_graph.	Munyoki Kilyungi
2024-07-03	Refactor how the generif md5 sum is calculated and stored in XAPIAN.	Munyoki Kilyungi
2024-07-03	Use correct cache for RIF/Wiki entries.	Munyoki Kilyungi
2024-07-03	feat: drop intermediate folders when running parallel xapian compact	John Nduli
2024-07-03	feat: add support for parallel xapian compact	John Nduli
2024-07-03	feat: index rif and wiki without positions	John Nduli
2024-07-03	feat: drop common words when building rdf caches	John Nduli
2024-07-03	feat: set 67 parallel processes to run in prod	John Nduli
2024-07-03	fix: remove namespaces since child processes copy the rdf caches	John Nduli
2024-07-03	fix: use correct prefix and index key; group wiki cache query	John Nduli
2024-07-03	feat: add wikidata prefix to search api	John Nduli
2024-07-03	feat: add wikidata indexing	John Nduli
2024-07-03	feat: add global wikicache	John Nduli
2024-07-03	feat: add sparql query to get wikidata	John Nduli
2024-06-26	Increase max number of results to 50000 for Xapian search	zsloan
2024-06-24	Use dataset Name instead of FullName for indexing	zsloan
2024-06-18	Revert "Set the file path for the logger."	Munyoki Kilyungi
2024-06-18	refactor: drop global variables	John Nduli
2024-06-17	Check table names in Xapian; if not, default to "-1".	Munyoki Kilyungi
2024-06-17	Fetch distinct comments.	Munyoki Kilyungi
2024-06-14	fix: typehints in index-genenetwork script	John Nduli
2024-06-14	fix: fix incorrect parameters in index_query function	John Nduli
2024-06-12	Move the generated xapian files to the correct directory.	Munyoki Kilyungi
2024-06-12	Set the file path for the logger.	Munyoki Kilyungi
2024-06-12	Change the date format for the logger.	Munyoki Kilyungi
2024-06-12	Log how long it takes to run the indexing script.	Munyoki Kilyungi
2024-06-12	Check for a running process by viewing the build dir's contents.	Munyoki Kilyungi
2024-06-12	Return 0 if data changes, else exit with 1.	Munyoki Kilyungi
2024-06-12	Explicitly pass sparql_uri to script.	Munyoki Kilyungi
2024-06-12	Rework how the indexes are built.	Munyoki Kilyungi
2024-06-12	Add method to check the validity of the tables+RDF checksums.	Munyoki Kilyungi
2024-06-12	Generate a SHA256 checksum for the generif graph.	Munyoki Kilyungi
2024-06-12	refactor: add db_utils global logger that will be the default	John Nduli
2024-06-12	fix: use current_app's logger to log db errors	John Nduli
2024-06-12	fix: log errors when an exception occurs due to db_utils	John Nduli
2024-06-01	Use global cache to store generif metadata.	Munyoki Kilyungi
2024-06-01	Add geneRIF prefix.	Munyoki Kilyungi
2024-06-01	Add geneRIF to gene index.	Munyoki Kilyungi
2024-05-20	Delete search endpoints for datasets/publications.	Munyoki Kilyungi
2024-05-20	Remove unused variable.	Munyoki Kilyungi
2024-05-09	Improve error messaging for use of invalid fahamu token.	Alexander_Kabui
2024-05-01	pep8 formatting	Alexander_Kabui
2024-05-01	Delete debug code	Alexander_Kabui