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AgeCommit message (Expand)Author
2021-03-08Replace APP_DEFAULTS dict with actual conf paramsBonfaceKilz
2021-03-08Delete "lookup_file" procedureBonfaceKilz
2021-03-08Add test data directoryBonfaceKilz
2021-03-08Ignore similarities in imports section when lintingBonfaceKilz
2021-03-08Update failing tests.BonfaceKilz
2021-03-08Use new extract_uploaded_file fn when uploading metadataBonfaceKilz
2021-03-08Extract files to "/TMPDIR/TOKEN"BonfaceKilz
2021-03-08Move "generate_random_n_string" to file_utilsBonfaceKilz
2021-03-08Fix failing testsBonfaceKilz
2021-03-08Add dummy test data filesBonfaceKilz
2021-03-08Add basic gemma documentation on how to use it from gn3BonfaceKilz
2021-03-08gn3: commands: Update docstringBonfaceKilz
2021-03-08Add extra endpoint for checking the status of a commandBonfaceKilz
2021-03-08Make the name of the redis job queue configurableBonfaceKilz
2021-03-08guix.scm: Add jupyter depsBonfaceKilz
2021-02-24Rename "/gemma/run" to "/gemma/k-gwa-computation"BonfaceKilz
2021-02-24Add tests for "/gemma/run" endpointBonfaceKilz
2021-02-24Update how gemma(extracted from gn2) is computedBonfaceKilz
2021-02-24Create a new helper function for generating k_values and GWABonfaceKilz
2021-02-24Add procedure that checks whether a list of paths existBonfaceKilz
2021-02-24Check if phenotype exists before creating oneBonfaceKilz
2021-02-24Add new procedure that computes the hash of an array of stringsBonfaceKilz
2021-02-24Add mypy-typing to functionBonfaceKilz
2021-02-24Gitignore generated windows/ mac filesBonfaceKilz
2021-02-24Append random 6 chars to generated phenotype fileBonfaceKilz
2021-02-24Create a new method for generating a valid phenotype file on the flyBonfaceKilz
2021-02-24Add GENODIR extra paramBonfaceKilz
2021-02-24Add endpoint for running GEMMABonfaceKilz
2021-02-24Delete unnececessary gemma endpointsBonfaceKilz
2021-02-24Remove test "/gemma" stubBonfaceKilz
2021-02-24Add integration test for "/gemma/version" endpointBonfaceKilz
2021-02-24gn3: api: gemma: Add endpoint for checking gemma-wrapper versionBonfaceKilz
2021-02-24Update "compose_gemma_cmd" testsBonfaceKilz
2021-02-24gn3: commands: Remove token and metadata_filename argsBonfaceKilz
2021-02-24Add type checking to gh workflowsBonfaceKilz
2021-02-24Add stubbed gemma endpointsBonfaceKilz
2021-02-17Add gemma-wrapperBonfaceKilz
2021-02-16Add test cases for "/metadata/upload" endpointBonfaceKilz
2021-02-16Return the correct message and status code in "/metadata/upload"BonfaceKilz
2021-02-16Register "general" blueprint endpointsBonfaceKilz
2021-02-16Add extra default config for bcryptBonfaceKilz
2021-02-16Add new endpoint for uploading dataBonfaceKilz
2021-02-16Add procedure for uploading gzipped fileBonfaceKilz
2021-02-16Add extra option to set email when queueing CMDBonfaceKilz
2021-02-16Add python-bcrypt as a dependencyBonfaceKilz
2021-02-16Add basic integration tests to test out the APIBonfaceKilz
2021-02-16Register blueprints in gn3/app.pyBonfaceKilz
2021-02-16Add instructions on how to run the flask appBonfaceKilz
2021-02-16Register gemma blueprintsBonfaceKilz
2021-02-16Add basic worker for processing commandsBonfaceKilz
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-22 17:59:09 +0000