| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-09-02 | Add spacing after punctuation. | Alexander_Kabui | |
| 2024-08-30 | Fix merge conflict. | Alexander_Kabui | |
| 2024-08-30 | Merge pull request #165 from genenetwork/feature/gnqa-search | Alexander Kabui | |
| Feature/gnqa search | |||
| 2024-08-29 | chore: pylint docstring | John Nduli | |
| 2024-08-29 | docs: add function comments | John Nduli | |
| 2024-08-29 | feat: add api calls to get categories and last comment | John Nduli | |
| 2024-08-29 | Add sql file for creating llm db tables. | Alexander_Kabui | |
| 2024-08-29 | Add default timestamp and and primary key for Rating table. | Alexander_Kabui | |
| 2024-08-29 | Fix minor typo. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Remove "@id" re-map in the json-ld base context. | Munyoki Kilyungi | |
| * gn3/db/constants.py [BASE_CONTEXT]: Remove "id" key. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Fetch the latest comment by the versionId. | Munyoki Kilyungi | |
| * gn3/db/rdf.py (get_wiki_entries_by_symbol): Update query to fetch the latest query by the version. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Make fetching wiki entries by symbol case insensitive. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Add "created" to wiki return. | Munyoki Kilyungi | |
| * gn3/db/rdf.py (get_wiki_entries_by_symbol): Add "created" to dictionary. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Update doc-string for "handle_sparql_errors". | Munyoki Kilyungi | |
| * gn3/errors.py (handle_sparql_errors): Correct the doc-string. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Return the correct status error code for url errors. | Munyoki Kilyungi | |
| * gn3/errors.py (url_server_error): Return a 500 http status code for URL server errors. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Add logging for gn llm errors. | Alexander_Kabui | |
| 2024-08-29 | Check for empty values when fetching search history. | Alexander_Kabui | |
| 2024-08-29 | Use correct http method `Delete` for search history. | Alexander_Kabui | |
| 2024-08-29 | Update gnqa search endpoint from POST to PUT. | Alexander_Kabui | |
| 2024-08-26 | Fix mypy errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Move "GET /wiki/<symbol>" end-point to gn3.api.metadata.wiki. | Munyoki Kilyungi | |
| * gn3/api/metadata.py (get_wiki_entries): Move this... * gn3/api/metadata_api/wiki.py (edit_wiki): ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Auto-pep8 buffer and ignore type check for payload. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py (edit_wiki): Ignore type-check for payload. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Fix pylint errors. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Remove duplicate imports. * gn3/db/constants.py: Add docstring. * gn3/db/rdf.py (get_wiki_entries_by_symbol): Remove duplicate dictionary key. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Fix handling of sparql errors. | Munyoki Kilyungi | |
| * gn3/errors.py (handle_sparql_errors): Use the exception's class name to fetch the status code. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | If there's no data, return a 404. | Munyoki Kilyungi | |
| * gn3/api/metadata.py (get_wiki_entries): Return an empty {} when there's no data. * gn3/db/rdf.py (query_frame_and_compact): Delete check for empty results. Instead just return the context as is. (query_and_compact): Ditto. (query_and_frame): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Set correct content-header & status code for ld+json/json response. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import jsonify, make_response. (get_wiki_entries): Set a 404 status code when a response is empty. Set correct Content-Type header for ld+json. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Replace map with list comprehension. | Munyoki Kilyungi | |
| * gn3/db/rdf.py (get_wiki_entries_by_symbol): Use list comprehensions. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Fetch all the wiki entries by symbol. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import "get_wiki_entries_by_symbol". (get_gn_genewiki_entries): Rename this to... (get_wiki_entries): this; and update the URL endpoint. * gn3/db/rdf.py: Import constants.BASE_CONTEXT. (get_wiki_entries_by_symbol): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Move constants to their own file. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Move constants from here... * gn3/db/rdf.py: ... and here, to... * gn3/db/constants.py: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Run autopep8 against file. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | chore: fix pylint errors | John Nduli | |
| 2024-08-26 | refactor: split out utlities into their modules and change api to use metadata | John Nduli | |
| 2024-08-26 | refactor: clean up wiki edit implementation | John Nduli | |
| * Add better error messages * Create more modular functions | |||
| 2024-08-26 | feat: add support for categories in edit query and clearer errors | John Nduli | |
| 2024-08-26 | feat: support for edit wiki entry | John Nduli | |
| 2024-08-13 | Fix pylint errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-09 | Use correct stemming strategy when searching. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-09 | Add RIF/WIKI as search prefixes for XRF/XWK. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-01 | Add logging for helping with troubleshooting. | Frederick Muriuki Muriithi | |
| 2024-08-01 | Add handler for unhandled exceptions from `gn3.oauth2` module. | Frederick Muriuki Muriithi | |
| 2024-08-01 | Update case-attribute editing to use new authorisation. | Frederick Muriuki Muriithi | |
| 2024-08-01 | Add `gn3.oauth2` module to handle authorisations | Frederick Muriuki Muriithi | |
| Add the `gn3.oauth2` which will handle the authorisations. It is intended to eventually replace the `gn3.auth` module which is a left over from when the authorisation server was part of GN3. | |||
| 2024-08-01 | Stem group field regardless of case. | Arun Isaac | |
| * gn3/api/search.py (parse_boolean_prefixed_field): New function. (parse_query): Use parse_boolean_prefixed_field for the group field. | |||
| 2024-08-01 | Stem all the time. | Arun Isaac | |
| With the STEM_SOME, xapian does not stem query words that start with a capital letter. Hence, we switch to the STEM_ALL strategy. * gn3/api/search.py (parse_query): Set stemming strategy to STEM_ALL. | |||
| 2024-07-23 | chore: add logging info | John Nduli | |
| 2024-07-23 | chore: mypy and pylint fixes | John Nduli | |
| 2024-07-23 | fix: resolve duplicate errors when updating data | John Nduli | |
| 2024-07-23 | refactor: clean query for insert | John Nduli | |
| 2024-07-23 | refactor: clean up insert query | John Nduli | |
| 2024-07-23 | refactor: reorganize update_rif script to be more pythonic | John Nduli | |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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