genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2024-06-14	fix: fix incorrect parameters in index_query function	John Nduli
2024-06-12	Move the generated xapian files to the correct directory.	Munyoki Kilyungi
2024-06-12	Set the file path for the logger.	Munyoki Kilyungi
2024-06-12	Change the date format for the logger.	Munyoki Kilyungi
2024-06-12	Log how long it takes to run the indexing script.	Munyoki Kilyungi
2024-06-12	Check for a running process by viewing the build dir's contents.	Munyoki Kilyungi
2024-06-12	Return 0 if data changes, else exit with 1.	Munyoki Kilyungi
2024-06-12	Explicitly pass sparql_uri to script.	Munyoki Kilyungi
2024-06-12	Rework how the indexes are built.	Munyoki Kilyungi
2024-06-12	Add method to check the validity of the tables+RDF checksums.	Munyoki Kilyungi
2024-06-12	Generate a SHA256 checksum for the generif graph.	Munyoki Kilyungi
2024-06-12	refactor: add db_utils global logger that will be the default	John Nduli
2024-06-12	fix: use current_app's logger to log db errors	John Nduli
2024-06-12	fix: log errors when an exception occurs due to db_utils	John Nduli
2024-06-01	Use global cache to store generif metadata.	Munyoki Kilyungi
2024-06-01	Add geneRIF prefix.	Munyoki Kilyungi
2024-06-01	Add geneRIF to gene index.	Munyoki Kilyungi
2024-05-20	Delete search endpoints for datasets/publications.	Munyoki Kilyungi
2024-05-20	Remove unused variable.	Munyoki Kilyungi
2024-05-09	Improve error messaging for use of invalid fahamu token.	Alexander_Kabui
2024-05-01	pep8 formatting	Alexander_Kabui
2024-05-01	Delete debug code	Alexander_Kabui
2024-05-01	Debug: check for if config is loaded in gn3.	Alexander_Kabui
2024-05-01	Fix: fix string formatting error and remove unused imports.	Alexander_Kabui
2024-05-01	Refactoring	Alexander_Kabui
2024-05-01	Debug:fix issue use current_app to fetch config	Alexander_Kabui
2024-05-01	Debug Process for LLM_DB_PATH	Alexander_Kabui
2024-05-01	Load LLM_DB_PATH as a setting.	Alexander_Kabui
2024-05-01	Add more error info for Database Open error raised	Alexander_Kabui
2024-04-30	Merge pull request #159 from genenetwork/chores/update-llm-db-configuration	Alexander Kabui
2024-04-30	Add a general Exception for the /rating api	Alexander_Kabui
2024-04-30	Replace SQLITE_DB_PATH with LLM_DB_PATH for llm db path.	Alexander_Kabui
2024-04-30	Update LLM_DB_PATH config.	Alexander_Kabui
2024-04-30	Add docstring to view_history function.	Munyoki Kilyungi
2024-04-30	Use JWT tokens from gn-auth.	Munyoki Kilyungi
2024-04-30	Add an endpoint to query a dataset's git history from it's id.	Munyoki Kilyungi
2024-04-30	Add a method for saving a dataset's metadata to git.	Munyoki Kilyungi
2024-04-30	Rename retrieve_dataset_metadata to retrieve_metadata.	Munyoki Kilyungi
2024-04-30	Remove an f-string that doesn't have any interpolated variables.	Munyoki Kilyungi
2024-04-30	Add command function that returns an Either monad.	Munyoki Kilyungi
2024-04-29	Prevent error when group isn't in parents/f1s JSON file	zsloan
2024-04-15	Delete unused imports.	Munyoki Kilyungi
2024-04-15	Fix error in flycheck-mode check in .dir-locals.py	Munyoki Kilyungi
2024-04-15	Remove empty '() in .dir-locals.el	Munyoki Kilyungi
2024-04-15	Show trailing white spaces in python-mode.	Munyoki Kilyungi
2024-04-15	Update ".dir-locals.el" with same python defaults.	Munyoki Kilyungi
2024-04-11	Include parents/f1s in default samplelist + add boolean options for them	zsloan
2024-04-04	Rephrase user feedback for Fahamu API in case it takes too long to respond.	Alexander_Kabui
2024-03-26	add sqlite-db-path config	Alexander_Kabui
2024-03-26	fetch pubmed file from /gn-meta/lit	Alexander_Kabui