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2024-05-16Refactor code for http request adapters.Alexander_Kabui
2024-05-16Pylint Fixes.Alexander_Kabui
2024-05-16Init code refactoring for clients fahamu interfaceAlexander_Kabui
2024-05-16Minor code refactoring relatedAlexander_Kabui
2024-05-16Pep8 formatting gn3:llm:process.Alexander_Kabui
2024-05-16Delete function: only useful when training own llm model.Alexander_Kabui
2024-05-16Delete response fileAlexander_Kabui
* File is obsolete functionality move to process.py file
2024-05-16Move Parsing Doc_Ids to process fileAlexander_Kabui
* Context: groups related items
2024-05-16Update file to use correct import from response fileAlexander_Kabui
2024-05-16Refactor code for llm:responseAlexander_Kabui
2024-05-16Remove unused imports for llm.response fileAlexander_Kabui
2024-05-16Pep8 Cleanup for llms/errors fileAlexander_Kabui
2024-05-16Code refactoringAlexander_Kabui
* this commit removes ununsed imports and also refactor GenenetworkQAclient Class
2024-05-16Pep8 formatting for response file.Alexander_Kabui
2024-05-16Merge pull request #162 from genenetwork/feature/llm2-refactoringAlexander Kabui
Feature/llm2 refactoring
2024-05-15Rename GnQNA blueprint to gnqa.Alexander_Kabui
* register gnqa api endpoint
2024-05-15Remove broad error handling.Alexander_Kabui
2024-05-15Pep8 formatting for llm Api file.Alexander_Kabui
2024-05-09Improve error messaging for use of invalid fahamu token.Alexander_Kabui
2024-05-01pep8 formattingAlexander_Kabui
2024-05-01Delete debug codeAlexander_Kabui
2024-05-01Debug: check for if config is loaded in gn3.Alexander_Kabui
2024-05-01Fix: fix string formatting error and remove unused imports.Alexander_Kabui
2024-05-01RefactoringAlexander_Kabui
*general cleanup for debug code * improve error messaging for successful rating
2024-05-01Debug:fix issue use current_app to fetch configAlexander_Kabui
2024-05-01Debug Process for LLM_DB_PATHAlexander_Kabui
* this commit is a debugging process for llm_path on cd * issue: writes to db but not correct path
2024-05-01Load LLM_DB_PATH as a setting.Alexander_Kabui
2024-05-01Add more error info for Database Open error raisedAlexander_Kabui
2024-04-30Merge pull request #159 from genenetwork/chores/update-llm-db-configurationAlexander Kabui
Chores/update llm db configuration
2024-04-30Add a general Exception for the /rating apiAlexander_Kabui
2024-04-30Replace SQLITE_DB_PATH with LLM_DB_PATH for llm db path.Alexander_Kabui
2024-04-30Update LLM_DB_PATH config.Alexander_Kabui
2024-04-30Add docstring to view_history function.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-30Use JWT tokens from gn-auth.Munyoki Kilyungi
* gn3/api/metadata.py: Import time, jwt, AUthorisationError. (edit_dataset): Use JWT tokens from gn-auth and validate them. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-30Add an endpoint to query a dataset's git history from it's id.Munyoki Kilyungi
* gn3/api/metadata.py: Import get_history. (view_history): New endpoint. * gn3/db/datasets.py (get_history): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-30Add a method for saving a dataset's metadata to git.Munyoki Kilyungi
* gn3/db/datasets.py (retrieve_metadata): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-30Rename retrieve_dataset_metadata to retrieve_metadata.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-30Remove an f-string that doesn't have any interpolated variables.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-30Add command function that returns an Either monad.Munyoki Kilyungi
* gn3/commands.py: Import Either, Left, Right. (monadic_run_cmd): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-29Prevent error when group isn't in parents/f1s JSON filezsloan
2024-04-15Delete unused imports.Munyoki Kilyungi
* gn3/api/llm.py: (rate_document, logging): Remove unused imports. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-15Fix error in flycheck-mode check in .dir-locals.pyMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-15Remove empty '() in .dir-locals.elMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-15Show trailing white spaces in python-mode.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-15Update ".dir-locals.el" with same python defaults.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-11Include parents/f1s in default samplelist + add boolean options for themzsloan
2024-04-04Rephrase user feedback for Fahamu API in case it takes too long to respond.Alexander_Kabui
2024-03-26add sqlite-db-path configAlexander_Kabui
2024-03-26fetch pubmed file from /gn-meta/litAlexander_Kabui
2024-03-25pep8 formattingAlexander_Kabui