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2022-11-10Migrations: migration for 'roles' tableFrederick Muriuki Muriithi
2022-11-10Migrations: migration for 'genotype_resources' tableFrederick Muriuki Muriithi
2022-11-10Migrations: Add migration for 'phenotype_resources' tableFrederick Muriuki Muriithi
2022-11-10Migrations: Add migration for mrna_resources tableFrederick Muriuki Muriithi
2022-11-10Migrations: Add migration for 'resources' tableFrederick Muriuki Muriithi
2022-11-09Migrations: Add `resource_meta` field to `resource_categories` tableFrederick Muriuki Muriithi
2022-11-09Tests: Provide backend fixture to (apply|rollback)_single_migrationFrederick Muriuki Muriithi
2022-11-08Fix issue where only primary samples were used when all samples arezsloan
2022-11-08Migrations: Improve `resource_categories` data tests.Frederick Muriuki Muriithi
2022-11-08Migrations: Init `resource_categories` with initial categoriesFrederick Muriuki Muriithi
2022-11-08Migrations: Create `resource_categories` table.Frederick Muriuki Muriithi
2022-11-08Migrations: Create `privileges` table.Frederick Muriuki Muriithi
2022-11-08Tests: Fix test name.Frederick Muriuki Muriithi
2022-11-08Tests: Fix typo: remove variable from quotes.Frederick Muriuki Muriithi
2022-11-08Add migration to create the groups table.Frederick Muriuki Muriithi
2022-11-08Tests: Generalise testing 'CREATE TABLE' migrationsFrederick Muriuki Muriithi
2022-11-08CLI: Provide `apply-migrations` command for flaskFrederick Muriuki Muriithi
2022-11-08Settings: Provide default `AUTH_DB` setting.Frederick Muriuki Muriithi
2022-11-08Tests: Tests the credentials check systemFrederick Muriuki Muriithi
2022-11-08Tests: Test migration to create user_credentials tableFrederick Muriuki Muriithi
2022-11-08Tests: Separate *ALL* unit test fixtures from auth-specific onesFrederick Muriuki Muriithi
2022-11-03Add credentials checkingFrederick Muriuki Muriithi
2022-11-03Rename migration test.Frederick Muriuki Muriithi
2022-11-03Initialise the Auth(entic|oris)ation packagesFrederick Muriuki Muriithi
2022-11-02Re-implement RDF related code to use monads in its own moduleMunyoki Kilyungi
2022-11-02Fix pylint and mypy errorsMunyoki Kilyungi
2022-11-02Add tests for monadic_dictMunyoki Kilyungi
2022-11-02Add type stubs for MaybeMunyoki Kilyungi
2022-10-28Use Xapian index path from app settings.Arun Isaac
2022-10-28Disable various pylint checks on Connection class.Arun Isaac
2022-10-28Add search.Arun Isaac
2022-10-26Add xapian database connection context manager.Arun Isaac
2022-10-25Reshape column major genotype database storage correctly.Arun Isaac
2022-10-22fix issue;parsing sample data (#102)Alexander Kabui
2022-10-18Add xapian indexing script.Arun Isaac
2022-10-18Support server side SQL query retrieval.Arun Isaac
2022-10-18Add database connection context manager.Arun Isaac
2022-10-18Add monadic utilities.Munyoki Kilyungi
2022-10-08README: a note on designPjotr Prins
2022-10-06DEBUG: Collect more info for debuggingFrederick Muriuki Muriithi
2022-10-06DEBUG: Collect more information on possible failure.Frederick Muriuki Muriithi
2022-10-03Bug: Do not process data for output too earlyFrederick Muriuki Muriithi
2022-09-30Add escape char to avoid error notice.Frederick Muriuki Muriithi
2022-09-29Use the built-in csv module for file outputFrederick Muriuki Muriithi
2022-09-06Update link to continuous deployment.Arun Isaac
2022-08-30Update test: include port in parsed data from mysql uriFrederick Muriuki Muriithi
2022-08-25revert for commit 6db3b2af8fc09999996d3acc09890a06f179c669;BugAlexander_Kabui
2022-08-23Remove conn.commit() and conn.rollback()Munyoki Kilyungi
2022-08-22Use non-default MySQL port if presentFrederick Muriuki Muriithi
2022-08-12Add mandatory/expected fields to parsed data.Frederick Muriuki Muriithi
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