| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2023-08-24 | Change get_pheno_csv_sample_data to use group ID instead of phenotype ID | zsloan | |
| 2023-08-18 | Commit on success, rollback on error. | Frederick Muriuki Muriithi | |
| 2023-08-17 | Fix query for fetching DataId when inserting ProbeSet data | zsloan | |
| 2023-08-17 | Fix a couple remaining issues with function parameters | zsloan | |
| 2023-08-17 | Fix tests to work with changes | zsloan | |
| 2023-08-17 | Combine pheno/mrna update functions + some other fixes | zsloan | |
| 2023-08-17 | Fix queries for fetching group names | zsloan | |
| 2023-08-17 | Fix fetch_trait query for phenotypes | zsloan | |
| 2023-08-17 | Fix a few misnamed tables in mrna delete/insert functions | zsloan | |
| 2023-08-17 | Implement ProbeSet sample data editing | zsloan | |
| Currently there's a lot of duplicated code, so I need to ask how best to simplify it later | |||
| 2023-08-17 | Fix probeset sample data and CSV sample data functions | zsloan | |
| 2023-08-17 | Fix query for retrieving mrna dataset group name | zsloan | |
| 2023-08-17 | Fix get_mrna_sample_data query | zsloan | |
| 2023-08-17 | Fix mrna group name query | zsloan | |
| 2023-08-17 | Remove Id select from probeset metadata query, since it's included in cols | zsloan | |
| 2023-08-17 | Add function for retrieving mRNA Assay group name | zsloan | |
| 2023-08-17 | Make several sample_data fetching functions specific to phenotype or mrna ↵ | zsloan | |
| assay resources, and change their naming accordingly | |||
| 2023-08-14 | auth: Remove documentation | Frederick Muriuki Muriithi | |
| The authentication/authorisation stuff is being moved to a separate repository. This commit removes the documentation for how to run migrations from this repository since it has been moved over to the new repository. | |||
| 2023-08-04 | Remove unused import | Frederick Muriuki Muriithi | |
| 2023-08-04 | Remove tests for deleted function. | Frederick Muriuki Muriithi | |
| 2023-08-04 | Remove the ORM-dependent `update` function. | Frederick Muriuki Muriithi | |
| 2023-08-02 | Add deprecation notice to ORM-dependent `update` function | Frederick Muriuki Muriithi | |
| Add a deprecation notice to discourage other devs from using the deprecated `update` function. | |||
| 2023-08-02 | Remove ORM-dependent `insert` function | Frederick Muriuki Muriithi | |
| Remove the object-relation-mapping dependent `insert` function to prevent it being used in the code down the line. | |||
| 2023-08-02 | Remove ORM-dependent `fetchall` and `fetchone` functions | Frederick Muriuki Muriithi | |
| Remove Object-Relational Mapping dependent function, `fetchall` and `fetchone` so as to prevent theirs use in the code moving forward. | |||
| 2023-08-02 | Integrate Temp traits to Auth | Frederick Muriuki Muriithi | |
| Temporary traits are not saved to the database, and have no attached resource (at this time). As such, make them all simply public-read to enable access for users. This might change after more information on usage of temporary traits is collected and considered. | |||
| 2023-08-02 | Use correct variable | Frederick Muriuki Muriithi | |
| After copying the calls to assign appropriate roles to the admin in the script, I forgot to update the variable name. This commit fixes that. | |||
| 2023-08-02 | Fix module name. | Frederick Muriuki Muriithi | |
| 2023-08-02 | Assign `group-leader` role to the admin for automatic group. | Frederick Muriuki Muriithi | |
| 2023-07-31 | Fix typing issue | Frederick Muriuki Muriithi | |
| 2023-07-31 | Fix linting and typing issues. | Frederick Muriuki Muriithi | |
| 2023-07-31 | Fix bugs. Return resource without data items. | Frederick Muriuki Muriithi | |
| * Fix bugs introduced while attempting pagination. * Return resource object without attached data items. | |||
| 2023-07-31 | Paginate the resource data items. | Frederick Muriuki Muriithi | |
| 2023-07-26 | Fix variable name. | Frederick Muriuki Muriithi | |
| 2023-07-26 | Remove debug statement. | Frederick Muriuki Muriithi | |
| 2023-07-26 | Fetch `metadata_audit` trail with direct query functions. | Frederick Muriuki Muriithi | |
| 2023-07-26 | Function to create a metadata audit trail. | Frederick Muriuki Muriithi | |
| 2023-07-26 | Merge pull request #126 from BonfaceKilz/fix/pin-python-3.9 | BonfaceKilz | |
| Roll back to python 3.9 in .guix-channel | |||
| 2023-07-26 | Roll back to python 3.9 in .guix-channel | Munyoki Kilyungi | |
| 2023-07-21 | Add some debug utilities. | Frederick Muriuki Muriithi | |
| 2023-07-21 | Update a Publication in the database. | Frederick Muriuki Muriithi | |
| 2023-07-21 | Fetch a publication by its PubMed ID | Frederick Muriuki Muriithi | |
| 2023-07-21 | Rename function: fetch_publication ==> fetch_publication_by_id | Frederick Muriuki Muriithi | |
| 2023-07-19 | Make repository a guix channel. | Arun Isaac | |
| * .guix-channel: New file. * guix.scm: Move to ... * .guix/genenetwork3-package.scm: ... here. Convert into a module with public package variables. | |||
| 2023-07-19 | Extract code dealing with ProbeSets to their own module. | Frederick Muriuki Muriithi | |
| 2023-07-19 | Extract reusable code to separate module | Frederick Muriuki Muriithi | |
| Extract the reusable function into a separate `query_tools` module for use in other modules. | |||
| 2023-07-18 | Bug: Change from `_id` to `id_` to avoid downstream breakage. | Frederick Muriuki Muriithi | |
| The downstream code expects `id_` not `_id`. | |||
| 2023-07-18 | Fix wrong import, and typing issues. | Frederick Muriuki Muriithi | |
| 2023-07-18 | Fetch a single publication by `PublicationId` | Frederick Muriuki Muriithi | |
| 2023-07-18 | Fetch metadata for a single phenotype. | Frederick Muriuki Muriithi | |
| 2023-07-18 | Fetch single phenotype trait by `dataset_id` and `trait_name`. | Frederick Muriuki Muriithi | |
 |
index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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