| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-01-26 | Skip test that checks working of MySQLdb rather than GN3. | Frederick Muriuki Muriithi | |
| 2025-01-26 | Use gn-libs' `database_connection` function. | Frederick Muriuki Muriithi | |
| 2025-01-21 | Enable new inserts of new wiki entries. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Import Optional (edit_wiki): Add "/edit" route. Add new comment id. * gn3/db/wiki.py (get_next_comment_id): New function for fetching the getting the next comment_id. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-13 | mypy fixes. | Alexander_Kabui | |
| 2025-01-13 | refactor: Returns markers and pseudomarkers as names in pairscan results. | Alexander_Kabui | |
| 2025-01-11 | Merge pull request #206 from genenetwork/enhancements/streaming-modularization | Alexander Kabui | |
| Enhancements/streaming modularization | |||
| 2025-01-09 | Typo fixes. | Alexander_Kabui | |
| 2025-01-09 | Minor typo fix. | Alexander_Kabui | |
| 2025-01-09 | Minor fix. | Alexander_Kabui | |
| 2025-01-09 | refactor: raise and Handle error a app level. | Alexander_Kabui | |
| 2025-01-09 | feat: Add a decorator function to enable streaming functinality. | Alexander_Kabui | |
| 2025-01-09 | fix: pylint fix. | Alexander_Kabui | |
| 2025-01-09 | refactor: remove obsolete streaming endpoint. | Alexander_Kabui | |
| 2025-01-09 | refactor: enhance docstring for streaming endpoint. | Alexander_Kabui | |
| 2025-01-09 | feat: Add and register streaming blueprint. | Alexander_Kabui | |
| 2025-01-09 | feat: Add streaming main endpoint. | Alexander_Kabui | |
| 2025-01-09 | feat: Init add module for streaming api endpoins. | Alexander_Kabui | |
| 2025-01-09 | refactor: import streaming functionality from module. | Alexander_Kabui | |
| 2025-01-09 | feat: Add function to run an external process and capture result in a file. | Alexander_Kabui | |
| 2025-01-09 | feat: Init add streaming module for genenetwork3. | Alexander_Kabui | |
| 2025-01-08 | refactor: Modify error message for run_process function. | Alexander_Kabui | |
| 2025-01-08 | refactor: Return results as dict with correct metadata for subprocess. | Alexander_Kabui | |
| 2025-01-08 | refactor: Pass arg commands to subprocess as a list. | Alexander_Kabui | |
| * Use with open context for subprocess. * Correctly handle subprocess error. | |||
| 2025-01-07 | feat: Revert commit 688d6a4. | Alexander_Kabui | |
| 2025-01-07 | feat: remove shell True to for debug. | Alexander_Kabui | |
| 2025-01-06 | feat: Add print statements for start and end of qtl script run. | Alexander_Kabui | |
| 2025-01-02 | Revert "Add missing commas to make `install_requires` a list of packages." | Frederick Muriuki Muriithi | |
| This reverts commit 36d1b06da4b76aef868d900474a5102e67839c4c. | |||
| 2025-01-02 | Revert "DEBUG: Guix build failure at `sanity-check` phase." | Frederick Muriuki Muriithi | |
| This reverts commit ce263f3fcdd0b74faf29fe220acf3633f1debdea. | |||
| 2025-01-02 | DEBUG: Guix build failure at `sanity-check` phase. | Frederick Muriuki Muriithi | |
| 2025-01-02 | Add pytest-mock to list of dependencies for tests. | Frederick Muriuki Muriithi | |
| 2025-01-02 | Install any JSON files under the `gn3` package. | Frederick Muriuki Muriithi | |
| 2025-01-02 | Add missing commas to make `install_requires` a list of packages. | Frederick Muriuki Muriithi | |
| 2024-12-20 | Add todo note for writing rqtl file. | Alexander_Kabui | |
| 2024-12-20 | Merge pull request #205 from ↵ | Alexander Kabui | |
| genenetwork/feature/integrate-streaming-api-functionality feat: Init integrate streaming functionality to rqtl1. | |||
| 2024-12-20 | fix: Pylint fixes. | Alexander_Kabui | |
| 2024-12-20 | feat: Enable streaming for output. | Alexander_Kabui | |
| 2024-12-20 | feat: Enable verbose for script by default. | Alexander_Kabui | |
| 2024-12-17 | feat: Init integrate streaming functionality to rqtl1. | Alexander_Kabui | |
| 2024-12-13 | fix: Fix unused variables pylint. | Alexander_Kabui | |
| 2024-12-13 | Fix pylint error line too long. | Alexander_Kabui | |
| 2024-12-13 | fix: Fetch the correct value from rqtl output file for permutation. | Alexander_Kabui | |
| 2024-12-12 | Remove quote marks for qtl output. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-12-12 | Fetch RSCRIPT command from global environment variable. | Munyoki Kilyungi | |
| * gn3/commands.py (compose_rqtl_cmd): Fetch RSCRIPT from global environment. Otherwise default to "Rscript". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-12-07 | Check whether genofile/phenofile exist separately. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-12-04 | Temp disable with for test Popen processes. | Alexander_Kabui | |
| 2024-12-04 | refactor: make pylint fixes. | Alexander_Kabui | |
| 2024-12-04 | Merge pull request #203 from genenetwork/feature/rqtl2-endpoints-with-files | Alexander Kabui | |
| Feature/rqtl2 endpoints with files | |||
| 2024-12-02 | Fix probeset metadata query to include dataset name | zsloan | |
| Previously this attempted to fetch probeset metadata using only the probeset name, but this is wrong. The dataset name is also needed. | |||
| 2024-11-28 | feat: define general endpoint for streaming stdout using unique identifier. | Alexander_Kabui | |
| 2024-11-27 | feat: return run id for compute and streaming api's. | Alexander_Kabui | |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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