| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-07-07 | Delete "reject_case_attribute." | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Delete "insert_case_attribute_audit." | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Delete "get_unreviewed_diffs." | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Delete "get_case_attributes." | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add test case for queue_edit. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Rename gn3/case_attributes.py -> gn3/api/case_attributes.py. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Move queue_edit to gn3.db.case_attributes. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Move EditStatus to gn3.db.case_attributes. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Move CaseAttributeEdit to gn3.db, rename diff to changes. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add function for queueing edits to sql and lmdb. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add CaseAttributeEdit dataclass for inbredset_id, user_id, diff. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Update how case-attributes are updated. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | refactor: Refactor gnqna fallback. | Alexander_Kabui | |
| 2025-07-07 | refactor: Pylint and mypy fixes. | Alexander_Kabui | |
| 2025-07-07 | feat: Add check for anonymous metadata. | Alexander_Kabui | |
| 2025-07-07 | feat: Remove authentication requirement for gnqa users. | Alexander_Kabui | |
| 2025-07-07 | feat: Add decorator to act as a fallback for anonymous users. | Alexander_Kabui | |
| 2025-07-07 | refactor: Replace cache query with user query if results in db. | Alexander_Kabui | |
| 2025-07-07 | feat: Add function to clean up query before dumping to db. | Alexander_Kabui | |
| 2025-07-07 | feat: Expand previous query search window from 1 to 21 days | Alexander_Kabui | |
| * Now searches for previous queries without requiring a user ID. | |||
| 2025-06-17 | Fix pylint issues in db/sample_data.py | zsloan | |
| 2025-06-17 | Include n_cases in batch update queries | zsloan | |
| 2025-06-17 | Add Batch Update code to GN3 | zsloan | |
| 2025-06-17 | Change sample_data fetch functions so they can use different inputs | zsloan | |
| 2025-06-17 | Add function for retrieving group_id given group_name | zsloan | |
| 2025-04-30 | Revert commit dd9ef90ee89e5c075acbd5ef63cb89518e726ca3. | Alexander_Kabui | |
| 2025-04-30 | refactor: For genetic probabilites use cores 0 to use all | Alexander_Kabui | |
| available of no cores detected. | |||
| 2025-04-30 | Disable log-in for wiki edits. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-25 | Handle null species in wiki comment query | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-25 | Return a zero when the species is unspecified. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-25 | Skip adding a species to RDF when the species is unspecified. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-24 | Add "**kwargs" to delete_wiki to make @require_token to work. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-24 | Remove early return in delete_wiki to complete query execution. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Fix pylint errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Implement delete_wiki API endpoint. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Import delete_wiki_entries_by_id. (delete_wiki): New API endpoint. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Add function to delete wiki entries by wiki_id. | Munyoki Kilyungi | |
| * delete_wiki_entries_by_id: New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Add test case for deleting wiki data. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Correctly ignore broad-expection-raised exceptions. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Autopep-8 file. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | sheepdog/worker.py: Fix logging-fstring-interpolation warning. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Auto-pep8 files. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Reduce arguments in run_async_cmd by using options dictionary. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-14 | Include effect mean/SE for 4-way crosses in R/qtl results | zsloan | |
| 2025-04-09 | Initialise the sheepdog package to ensure the worker gets installed. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Fix failing test. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Pass application log-level to the worker. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Use computed job queue to avoid collisions. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Add a function to compute the job queue from the settings. | Frederick Muriuki Muriithi | |
| 2025-04-08 | APPLICATION_ENVIRONMENT: New configuration variable | Frederick Muriuki Muriithi | |
| Add a new application configuration variable, "APPLICATION_ENVIRONMENT" that will be useful to distinguish resources for different instances of the application that might run on the same host. The default value is an empty string in order to allow backwards compatibility with existing code. An example of where this finds utility: If you run multiple instances of the application, but they all share the same redis instance, then key-collisions from the different running applications will happen, leading to subtle, difficult to troubleshoot bugs. | |||
| 2025-04-08 | Add logging to worker. | Frederick Muriuki Muriithi | |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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