index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2021-06-20
minor fix docstring
Alexander Kabui
2021-06-20
merge main
Alexander Kabui
2021-06-20
fix conflict
Alexander Kabui
2021-06-20
make requested changes to biweight
Alexander Kabui
2021-06-18
Merge pull request #13 from zsloan/feature/add_rqtl_endpoints
...
Feature/add rqtl endpoints
zsloan
2021-06-18
Fixed another error where test_generate_rqtl_command didn't include the filen...
zsloan
2021-06-18
Fixed file type from json to csv for test_generate_rqtl_command
zsloan
2021-06-18
Fixed test_rqtl.py to include Rscript in the command
zsloan
2021-06-18
Fixed test_compose_rqtl_command test; forgot to include Rscript in the command
zsloan
2021-06-18
Change test_compose_rqtl_command in test_commands.py to have different argume...
...
Changed some parameters in test_compose_rqtl_cmd to avoid pylint complaining about duplicate code
zsloan
2021-06-18
Fixed pylint issues
zsloan
2021-06-18
add ignore_missing_imports for numpy in mypy.ini since it complains about tha...
zsloan
2021-06-18
Resolve mypy errors in computations/rqtl.py
zsloan
2021-06-18
Fixed spelling of coeffient to coefficient
zsloan
2021-06-18
minor fixes
Alexander Kabui
2021-06-18
remove ununsed variables
Alexander Kabui
2021-06-18
refactor perf query functions
Alexander Kabui
2021-06-18
rename perf query file
Alexander Kabui
2021-06-18
pep8 formatting
Alexander Kabui
2021-06-18
add tests to setup packages
Alexander Kabui
2021-06-18
add types and dataset names
Alexander Kabui
2021-06-18
initial commit for queries perfomance tests
Alexander Kabui
2021-06-18
db: test_db: Add extra variable in test data for "id"
BonfaceKilz
2021-06-18
Rename json_data column to json_diff_data
BonfaceKilz
2021-06-18
gn3: db: Fix how columns from tables is resolved
BonfaceKilz
2021-06-18
gn3: db: Add "id_" property to metadata_audit class and mapping
BonfaceKilz
2021-06-18
tests: test_db: Add a test-case for fetchall
BonfaceKilz
2021-06-18
gn3: db: Add "fetchall" method.
BonfaceKilz
2021-06-18
gn3: metadata_audit: Make props for MetadataAudit class optional
BonfaceKilz
2021-06-18
gn3: db: Make "WHERE" clause optional
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* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.
BonfaceKilz
2021-06-18
gn3: db: Use correct DATACLASSMAP entry from metadata_audit
BonfaceKilz
2021-06-18
tests: test_db: Rename TestPhenotype
BonfaceKilz
2021-06-18
tests: test_phenotype: Rename to test_db
BonfaceKilz
2021-06-18
gn3: db: sort imports
BonfaceKilz
2021-06-18
gn3: db: Remove "escape_string" from imports
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We use prepared statements, so no need to have this.
BonfaceKilz
2021-06-18
Use prepared statements for FETCH sql function
BonfaceKilz
2021-06-18
gn3: db: Replace items() with keys()
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* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
BonfaceKilz
2021-06-18
Use prepared statements for UPDATE sql function
BonfaceKilz
2021-06-18
tests: test_audit: Update test case to check for prepared statements
BonfaceKilz
2021-06-18
gn3: db: Add new function for doing sql INSERT
BonfaceKilz
2021-06-18
sql: Add a new folder that houses sql statements for new tables
BonfaceKilz
2021-06-18
Add data structures for the table metadata_audit
BonfaceKilz
2021-06-18
gn3: db: Add spacing before around "AND" in sql clause
BonfaceKilz
2021-06-18
unit: test_phenotypes: Test for multiple "WHERE" clauses
BonfaceKilz
2021-06-18
Get the diff between 2 dicts and return that as a dict
BonfaceKilz
2021-06-18
gn3: db: Return None if data and where are empty
BonfaceKilz
2021-06-18
fix index error (#16)
Alexander Kabui
2021-06-18
Move the methods, "update" and "fetch", to gn3.db
BonfaceKilz
2021-06-18
db: phenotypes: Fix publication_mapping
BonfaceKilz
2021-06-18
db: phenotypes: Fix typo
BonfaceKilz
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