genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2021-10-12	Fixed mypy typing errors	zsloan
2021-10-12	Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into featu...	zsloan
2021-10-06	guix.scm: Add python-flask-cors and python-plotly dependencies	BonfaceKilz
2021-09-28	Provide loci names to heatmap	Frederick Muriuki Muriithi
2021-09-28	Retrieve loci names ordered by chromosomes	Frederick Muriuki Muriithi
2021-09-28	Approximate single-spectrum colour scale in GN1	Frederick Muriuki Muriithi
2021-09-28	Merge pull request #38 from genenetwork/feature/wgcna_analysis	BonfaceKilz
2021-09-27	modify unittests	Alexander Kabui
2021-09-27	modify integration tests	Alexander Kabui
2021-09-27	add file not found exception	Alexander Kabui
2021-09-27	add tests for calling wgcna_script	Alexander Kabui
2021-09-27	return str error for exception	Alexander Kabui
2021-09-27	fix merge conflicts	Alexander Kabui
2021-09-27	remove unnecessary comments and variables	Alexander Kabui
2021-09-27	Merge pull request #37 from genenetwork/heatmap_generation	BonfaceKilz
2021-09-27	Remove unnecessary variable.	Frederick Muriuki Muriithi
2021-09-27	Narrow the exception and add comments	Frederick Muriuki Muriithi
2021-09-27	Update terminology: `riset` to `group`	Frederick Muriuki Muriithi
2021-09-27	Update terminology: `strain` to `sample`	Frederick Muriuki Muriithi
2021-09-25	minor fixes for unittests	Alexander Kabui
2021-09-23	Tried to make the docstrings more consistent	zsloan
2021-09-23	Merge branch 'feature/add_rqtl_pairscan' of https://github.com/zsloan/genenet...	zsloan
2021-09-23	Add typing to some functions	zsloan
2021-09-23	Add functions for getting proximal/distal markers for each pseudomarker posit...	zsloan
2021-09-23	Fix issue that causes R/qtl to always run pair-scan even if pair-scan isn't s...	zsloan
2021-09-23	Added genofile name to inputs for processing R/qtl pair-scan results, since i...	zsloan
2021-09-23	Removed quotes from beginning and end of chromosome string	zsloan
2021-09-23	Fixed a cople function calls to use the updated function names	zsloan
2021-09-23	Create pairscan_for_figure and pairscan_for_table functions that return the D...	zsloan
2021-09-23	Updated rqtl_wrapper to also return a map file when doing a pair-scan (since ...	zsloan
2021-09-23	Fix imports to import both process_rqtl_mapping and process_rqtl_pairscan in ...	zsloan
2021-09-23	Added pairscan boolean kwarg and process_rqtl_pairscan function for reading i...	zsloan
2021-09-23	Added line priting pair-scan results to CSV and changed the default step-size...	zsloan
2021-09-23	- Added scan_func function that determines whether scanone or scantwo	zsloan
2021-09-23	Added option for running pairscan to rqtl_wrapper.R	zsloan
2021-09-23	add traits as columns names and pass as json input	Alexander Kabui
2021-09-23	minor fixes for endpoint	Alexander Kabui
2021-09-23	Return r error if returncode!=0	Alexander Kabui
2021-09-23	read generated files from r and return output	Alexander Kabui
2021-09-23	check for na powerEst and use a default value	Alexander Kabui
2021-09-23	append input to output	Alexander Kabui
2021-09-23	sample output data	Alexander Kabui
2021-09-23	validate required output	Alexander Kabui
2021-09-23	add mock test data for script	Alexander Kabui
2021-09-23	pass json file path as an arg	Alexander Kabui
2021-09-23	pass other variables from user input for network constr	Alexander Kabui
2021-09-23	add rjson dependency	Alexander Kabui
2021-09-23	load data from json file and and convert to dt	Alexander Kabui
2021-09-23	Add missing dependencies causing pylint to fail	Frederick Muriuki Muriithi
2021-09-23	Refactor: Move common sample data to separate file	Frederick Muriuki Muriithi