| Age | Commit message (Expand) | Author |
|---|
| 2022-08-10 | Fix returned value for 'parse_correlation_output'•••* Always return dict
* Fix internal '__parse_line__' to always have a valid return
| Frederick Muriuki Muriithi |
| 2022-08-10 | code refactoring | Frederick Muriuki Muriithi |
| 2022-08-10 | remove unnecessary parsing of floats | Alexander_Kabui |
| 2022-08-10 | code refactoring | Frederick Muriuki Muriithi |
| 2022-08-10 | remove unnecessary parsing of floats | Alexander_Kabui |
| 2022-08-10 | enhancements for rust tissue | Frederick Muriuki Muriithi |
| 2022-08-10 | pylint fixes | Alexander_Kabui |
| 2022-08-10 | update test;parse output | Alexander_Kabui |
| 2022-08-10 | code refactoring | Alexander_Kabui |
| 2022-08-10 | remove unnessary code | Alexander_Kabui |
| 2022-08-10 | remove unnecessary parsing of floats | Alexander_Kabui |
| 2022-08-10 | merge for results | Alexander_Kabui |
| 2022-08-10 | enhancements for rust tissue | Alexander_Kabui |
| 2022-08-03 | Refactor: Remove unnecessary whitespace and name | Frederick Muriuki Muriithi |
| 2022-08-03 | Refactor: Remove unnecessary iterations and name•••* remove extra iteration that is unnecessary
* remove unnecessary variables
| Frederick Muriuki Muriithi |
| 2022-07-29 | New script to run sample correlations•••* README.md: update mypy's invocation
* scripts/argparse_actions.py: new file - implement custom FileCheck action
for argparse
* scripts/sample_correlations.py: new file - implement new script to run
sample correlations in an external process
| Frederick Muriuki Muriithi |
| 2022-07-29 | Fix failing tests•••* gn3/computations/correlations.py: rename function
* mypy.ini: deactivate mypy error about missing imports
* tests/integration/test_correlation.py: mock correct function
* tests/unit/computations/test_correlation.py: test correct function
| Frederick Muriuki Muriithi |
| 2022-07-28 | Add command to run the sample correlations in an external process | Frederick Muriuki Muriithi |
| 2022-07-28 | Update sample correlations code to use multiprocessing•••* To help speed up the processing of the correlations, convert the
`compute_all_sample_correlation` function to use the multiprocessing module.
| Frederick Muriuki Muriithi |
| 2022-07-22 | mypy fixes | Alexander_Kabui |
| 2022-07-22 | pep8 fixes | Alexander_Kabui |
| 2022-07-22 | linting and tests fixes | Alexander_Kabui |
| 2022-07-22 | import rust_correlation when running gn3 as lib | Alexander_Kabui |
| 2022-07-22 | compute num overlap | Alexander_Kabui |
| 2022-07-22 | fix for bug splitting list data | Alexander_Kabui |
| 2022-07-22 | minor fixes for parsing data | Alexander_Kabui |
| 2022-07-22 | code to parse tissue correlation input | Alexander_Kabui |
| 2022-07-22 | mypy pylint fixes | Alexander_Kabui |
| 2022-07-22 | code to fetch correct sample corr data | Alexander_Kabui |
| 2022-07-22 | delete dead_code;rename variables | Alexander_Kabui |
| 2022-07-22 | add unittests | Alexander_Kabui |
| 2022-07-22 | minor fixes | Alexander_Kabui |
| 2022-07-11 | Allow CORS everywhere by default•••Allow the resources (endpoints) to be accessible from anywhere on the internet
by default, while still allowing for restriction via CLI environment variable
on a case by case basis.
| Frederick Muriuki Muriithi |
| 2022-06-29 | use explicit parameters | Alexander_Kabui |
| 2022-06-29 | fix issues | Alexander_Kabui |
| 2022-06-29 | lint test file | Alexander |
| 2022-06-29 | pylint fixes | Alexander |
| 2022-06-29 | add tests | Alexander |
| 2022-06-29 | add test data | Alexander |
| 2022-06-29 | minor fixes | Alexander |
| 2022-06-29 | handle tmp files generation | Alexander |
| 2022-06-29 | parse output data | Alexander |
| 2022-06-29 | pep8 formatting | Alexander |
| 2022-06-29 | new variable: CORRELATION_COMMAND | Alexander |
| 2022-06-29 | init test correlation rust module | Alexander |
| 2022-06-29 | init rust correlation module | Alexander |
| 2022-06-28 | Parse the method from UI before passing it to external process•••To reduce the chances of the system failing due to the external process being
launched with the wrong parameters, add a parsing stage that converts the
method from the UI into a form acceptable by the CLI script.
* gn3/commands.py: parse the method from UI
* scripts/partial_correlations.py: simplify the acceptable methods
| Frederick Muriuki Muriithi |
| 2022-06-21 | tests: test_file_utils: Replace pytest.mark.skip with unittest.skip•••"python setup.py test" won't skip "pytest.mark.skip" thereby leading to
build failure when you try to package gn3.
| BonfaceKilz |
| 2022-06-21 | setup.py: Remove commented out "ipfshttpclient" line | BonfaceKilz |
| 2022-06-21 | gn3: fs_helpers: Fix pylint errors•••* gn3/fs_helpers.py: Remove unused "pathlib" import.
(cache_ipfs_file): Disable "unused-argument" warting.
| BonfaceKilz |
