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2022-12-23Update how to set configurations in READMEzsloan
2022-12-23Add a couple necessary environment variableszsloan
2022-12-22tests: Setup environment variables and configsFrederick Muriuki Muriithi
2022-12-22auth: implement OAuth2 flow.oauth2_auth_flowFrederick Muriuki Muriithi
2022-12-21auth: oauth2: users: Add expected propertyFrederick Muriuki Muriithi
2022-12-21migrations: create the authorisation_code tableFrederick Muriuki Muriithi
2022-12-21migrations: create oauth2_tokens tableFrederick Muriuki Muriithi
2022-12-21migrations: New migrationFrederick Muriuki Muriithi
2022-12-21auth: Add default row_factory to sqlite3Frederick Muriuki Muriithi
2022-12-21Enable authenticationFrederick Muriuki Muriithi
2022-12-21gn3: (gn3.random -> gn3.chancy): Rename module to avoid conflicts.Frederick Muriuki Muriithi
2022-12-12auth: functions to get user resourcesFrederick Muriuki Muriithi
2022-12-12tests: Update fixtures to use for testing resources functionsFrederick Muriuki Muriithi
2022-12-12auth: Add a way to check whether a user is a group leaderFrederick Muriuki Muriithi
2022-12-12auth: pass cursor object to `user_group` functionFrederick Muriuki Muriithi
2022-12-12auth: Attach group to GroupRole, rather than group_idFrederick Muriuki Muriithi
2022-12-12tests: Reorganise fixturesFrederick Muriuki Muriithi
2022-12-08Remove unused importFrederick Muriuki Muriithi
2022-12-08auth: test for `user_resources` function (incomplete)Frederick Muriuki Muriithi
2022-12-08tests: Fix issues caught by testsFrederick Muriuki Muriithi
2022-12-08auth: add test to retrieve public resourcesFrederick Muriuki Muriithi
2022-12-08auth: add function to retrieve a user's groupFrederick Muriuki Muriithi
2022-12-08migrations: Add column `public` to `resources` tableFrederick Muriuki Muriithi
2022-12-06Use a dataset's name to fetch it's metadata from RDFMunyoki Kilyungi
2022-12-06migrations: Add `group_user_roles_on_resources` tableFrederick Muriuki Muriithi
2022-12-06mypy and pylint fixesAlexander_Kabui
2022-12-06remove noisy tests for constant array correlationAlexander_Kabui
2022-12-06update tests for lit correlationAlexander_Kabui
2022-12-02correlations: return `None` rather than zero for missing lit corrsFrederick Muriuki Muriithi
2022-11-29remove trailing whitespaceAlexanderKabui
2022-11-29remove unused function parameterAlexanderKabui
2022-11-29tests: fix failing testFrederick Muriuki Muriithi
2022-11-28Catch a URLError when virtuoso isn't running at allMunyoki Kilyungi
2022-11-28Fix pylint errorsMunyoki Kilyungi
2022-11-28Fail gracefully when virtuoso is not accessibleMunyoki Kilyungi
2022-11-24auth: Check for authentication and fix errorsFrederick Muriuki Muriithi
2022-11-24auth: Implement `create_resource` functionFrederick Muriuki Muriithi
2022-11-24auth: Define base exceptionsFrederick Muriuki Muriithi
2022-11-24tests: Add test for `create_resource`Frederick Muriuki Muriithi
2022-11-23Create a new REST endpoint for fetching a phenotype's metadataMunyoki Kilyungi
2022-11-21auth: Prevent group leader from being a member of multiple groupsFrederick Muriuki Muriithi
2022-11-17auth: Finish implementation of `create_group_role`Frederick Muriuki Muriithi
2022-11-17Migrations: Create `group_users` tableFrederick Muriuki Muriithi
2022-11-17tests: Add test to check creation of roles attached to groupsFrederick Muriuki Muriithi
2022-11-17auth: Define the `User` typeFrederick Muriuki Muriithi
2022-11-17Tests: Make test failure messages clearer.Frederick Muriuki Muriithi
2022-11-17Migrations: Add column `group_role_id` to `group_roles` tableFrederick Muriuki Muriithi
2022-11-17tests: test for addition of data to non-empty tableFrederick Muriuki Muriithi
2022-11-16pylint: fix some linting errorsFrederick Muriuki Muriithi
2022-11-16tests: Add tests for privilegesFrederick Muriuki Muriithi