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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2021-06-18
gn3: db: Add "fetchall" method.
BonfaceKilz
2021-06-18
gn3: metadata_audit: Make props for MetadataAudit class optional
BonfaceKilz
2021-06-18
gn3: db: Make "WHERE" clause optional
...
* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.
BonfaceKilz
2021-06-18
gn3: db: Use correct DATACLASSMAP entry from metadata_audit
BonfaceKilz
2021-06-18
tests: test_db: Rename TestPhenotype
BonfaceKilz
2021-06-18
tests: test_phenotype: Rename to test_db
BonfaceKilz
2021-06-18
gn3: db: sort imports
BonfaceKilz
2021-06-18
gn3: db: Remove "escape_string" from imports
...
We use prepared statements, so no need to have this.
BonfaceKilz
2021-06-18
Use prepared statements for FETCH sql function
BonfaceKilz
2021-06-18
gn3: db: Replace items() with keys()
...
* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
BonfaceKilz
2021-06-18
Use prepared statements for UPDATE sql function
BonfaceKilz
2021-06-18
tests: test_audit: Update test case to check for prepared statements
BonfaceKilz
2021-06-18
gn3: db: Add new function for doing sql INSERT
BonfaceKilz
2021-06-18
sql: Add a new folder that houses sql statements for new tables
BonfaceKilz
2021-06-18
Add data structures for the table metadata_audit
BonfaceKilz
2021-06-18
gn3: db: Add spacing before around "AND" in sql clause
BonfaceKilz
2021-06-18
unit: test_phenotypes: Test for multiple "WHERE" clauses
BonfaceKilz
2021-06-18
Get the diff between 2 dicts and return that as a dict
BonfaceKilz
2021-06-18
gn3: db: Return None if data and where are empty
BonfaceKilz
2021-06-18
fix index error (#16)
Alexander Kabui
2021-06-18
Move the methods, "update" and "fetch", to gn3.db
BonfaceKilz
2021-06-18
db: phenotypes: Fix publication_mapping
BonfaceKilz
2021-06-18
db: phenotypes: Fix typo
BonfaceKilz
2021-06-18
tests: test_phenotype: Add function that tests "fetchone"
BonfaceKilz
2021-06-18
db: phenotypes: Add function for fetching a single result
...
* gn3/db/phenotypes.py (fetchone): New function.
BonfaceKilz
2021-06-18
db: phenotypes: Add a dataclass map
...
Maps a string to it's dataclass.
BonfaceKilz
2021-06-18
db: phenotypes: Add Publication table mapping
BonfaceKilz
2021-06-18
db: phenotypes: Rename phenotype_column_mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add Publication dataclass and mapping
BonfaceKilz
2021-06-18
db: phenotypes: Update failing tests
BonfaceKilz
2021-06-18
db: phenotypes: Generalise the update function
...
* gn3/db/phenotypes.py (update_phenotype): Delete it. (update): New, more general function.
BonfaceKilz
2021-06-18
db: phenotypes: Map a table to it's relevant dict mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add type for Dataclass
...
See: https://www.py4u.net/discuss/188952
BonfaceKilz
2021-06-18
db: phenotypes: Put mapping def after dataclass
BonfaceKilz
2021-06-18
db: phenotypes: Add phenotype table mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add dataclass to represent PublishXRef
BonfaceKilz
2021-06-18
db: phenotype: Make "pylint: disable=[R0902]" global for file
BonfaceKilz
2021-06-18
tests: test_phenotypes: New test cases for loading phenotypes
BonfaceKilz
2021-06-18
db: phenotypes: Add a way of updating the Phenotype table
...
* gn3/db/phenotypes.py (Phenotype): New dataclass. (update_phenotype): New function. [phenotype_column_mapping]: New variable.
BonfaceKilz
2021-06-18
Fixed issue where all bool kwargs were always being passed to generate_rqtl_c...
zsloan
2021-06-18
Added option for enabling permutation strata
...
Fixed issue where covariates with numerical names were being ignored Fixed issue where the hash filename wasn't being used for the permutation output
zsloan
2021-06-18
Add rqtl_wrapper.R script and necessary imports to guix.scm
zsloan
2021-06-18
Fix R/qtl command and the way keyword arguments are passed
zsloan
2021-06-16
Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into main
zsloan
2021-06-16
Fixed spelling of coeffient to coefficient
zsloan
2021-06-16
add r-wgna package
Alexander Kabui
2021-06-16
minor fix
Alexander Kabui
2021-06-16
refactor script and add tests
Alexander Kabui
2021-06-16
add r_testthatpackage
Alexander Kabui
2021-06-16
add fetch args function
Alexander Kabui
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