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2021-03-15Bump up numpy to 1.20.1BonfaceKilz
2021-03-15Add sqlalchemy-stubs as a requirementBonfaceKilz
2021-03-15Add a basic mypy init fileBonfaceKilz
2021-03-15Apply pep-8 formattingBonfaceKilz
2021-03-15Delete redundant gn3/config.pyBonfaceKilz
2021-03-13Correlation api (#2)Alexander Kabui
2021-03-10Update docs with k-gwa endpoints demoBonfaceKilz
2021-03-10Add basic docs on k and gwa related endpointsBonfaceKilz
2021-03-10Add missing "/" in URL in docstringBonfaceKilz
2021-03-10Rename "covariates" to "covars" in endpoints for consistencyBonfaceKilz
2021-03-10Use the correct id to fetch cmd statusBonfaceKilz
2021-03-10Queue the command only onceBonfaceKilz
2021-03-10Fix k-compute command when "loco" is trueBonfaceKilz
2021-03-10Fix encoding issues with workerBonfaceKilz
2021-03-10Use the correct redis cmd when updating variablesBonfaceKilz
2021-03-10Use correct queue name in workerBonfaceKilz
2021-03-10Call Redis hset correctly in the right orderBonfaceKilz
2021-03-10Update test to ensure redis.hset is called correctlyBonfaceKilz
2021-03-10Apply yapf file formatting to fileBonfaceKilz
2021-03-10Add extra endpoint for when TOKEN isn't providedBonfaceKilz
2021-03-10Extract file to the correct locationBonfaceKilz
2021-03-10Add extra tests for file utilsBonfaceKilz
2021-03-10Run yapf-formatter against fileBonfaceKilz
2021-03-08Remove unused importsBonfaceKilz
2021-03-08Delete "generate_gemma_computation_cmd"BonfaceKilz
2021-03-08Remove "/k-gwa-computation"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/<token>"BonfaceKilz
2021-03-08Update jupyter notebook with more endpointsBonfaceKilz
2021-03-08Replace "compute_k_values" with "generate_gemma_cmd"BonfaceKilz
2021-03-08Use new "compute_k_values" procedureBonfaceKilz
2021-03-08Add generic fn for computing k and gwa valuesBonfaceKilz
2021-03-08Apply pep-8 formattingBonfaceKilz
2021-03-08Add new endpointBonfaceKilz
2021-03-08Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"BonfaceKilz
2021-03-08bug: Put a space between gemma-wrapper argsBonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"BonfaceKilz
2021-03-08Prepend all endpoints with "api"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/<token>"BonfaceKilz
2021-03-08Create a more generic procedure for getting hash values of filesBonfaceKilz
2021-03-08Replace APP_DEFAULTS dict with actual conf paramsBonfaceKilz
2021-03-08Delete "lookup_file" procedureBonfaceKilz
2021-03-08Add test data directoryBonfaceKilz
2021-03-08Ignore similarities in imports section when lintingBonfaceKilz
2021-03-08Update failing tests.BonfaceKilz
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