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2023-05-22Add function for retrieving samplelist from .geno filezsloan
2023-05-22Make directory at "path" and all intermediate ones.Frederick Muriuki Muriithi
2023-05-19auth: Provide user and resource info in the trait dataFrederick Muriuki Muriithi
2023-05-19auth: Check for json on authorisation endpoint. Add user data.Frederick Muriuki Muriithi
2023-05-18auth: Rename collectionsFrederick Muriuki Muriithi
2023-05-18auth: user collections: Add and/or remove traits.Frederick Muriuki Muriithi
2023-05-17auth: Delete collections by ID.Frederick Muriuki Muriithi
2023-05-17auth: Import/Delete Anonymous CollectionsFrederick Muriuki Muriithi
2023-05-16auth: View a collection by its ID.Frederick Muriuki Muriithi
2023-05-15collections: Move code to new package. Create new collections.Frederick Muriuki Muriithi
2023-05-12auth: Provide separate endpoint for anonymous collections.Frederick Muriuki Muriithi
2023-05-11auth: Fix bug with migration of user collectionsFrederick Muriuki Muriithi
2023-05-10auth: Add the /oauth2/user/collections/list endpointFrederick Muriuki Muriithi
2023-05-10auth: Only check deliverability of emails at registration.Frederick Muriuki Muriithi
2023-05-09auth: Implement "Authorization Code Flow"auth/implement-authorization-code-flowFrederick Muriuki Muriithi
2023-04-27auth: Retrieve `system:*` privileges from resource rolesFrederick Muriuki Muriithi
2023-04-27auth: List also the non-resource privileges the user hasFrederick Muriuki Muriithi
2023-04-27auth: Add authorisation checks for role editting.Frederick Muriuki Muriithi
2023-04-27oauth2: Provide missing `user_editable` argument.Frederick Muriuki Muriithi
2023-04-25auth: bug: Provide missing `user_editable` argument.Frederick Muriuki Muriithi
2023-04-25auth: provide `user_editable` flag in dictified outputFrederick Muriuki Muriithi
2023-04-25auth: Roles: Check for editabilityFrederick Muriuki Muriithi
2023-04-24auth: Return the actual privileges for the userFrederick Muriuki Muriithi
2023-04-21logging: Set LOG LEVEL on root logger to enable logsFrederick Muriuki Muriithi
2023-04-21auth: Attach linked data to specific resources.Frederick Muriuki Muriithi
2023-04-21Setup module for loggingFrederick Muriuki Muriithi
2023-04-21auth: Fetch user group phenotypes not attached to a resource.Frederick Muriuki Muriithi
2023-04-19oauth2: Link the phenotype traits to user groups.Frederick Muriuki Muriithi
2023-04-19Fix minor linting and typing issuesFrederick Muriuki Muriithi
2023-04-19auth: Setup selected traits correctlyFrederick Muriuki Muriithi
2023-04-19auth: phenotypes - provide default empty list for selected traits.Frederick Muriuki Muriithi
2023-04-18auth: Pass `--per-page` and `--selected` options.Frederick Muriuki Muriithi
2023-04-18auth: Consistently JSON encode values.Frederick Muriuki Muriithi
2023-04-17Fix typo, os.environment -> os.environMunyoki Kilyungi
2023-04-17Update the default SPARQL endpointMunyoki Kilyungi
2023-04-17Create new endpoint for fetching GeneRIF entriesMunyoki Kilyungi
2023-04-17Hook up code to use external search script for phenotypesFrederick Muriuki Muriithi
2023-04-17auth: Delete code that is no longer usedFrederick Muriuki Muriithi
2023-04-15Decouple `gn3.db_utils` from `flask.current_app`.Frederick Muriuki Muriithi
2023-04-14auth: Add external script to search for phenotypesFrederick Muriuki Muriithi
2023-04-14auth: Disconnect module from flask applicationFrederick Muriuki Muriithi
2023-04-12auth: Enable listing of unlinked genotype/mRNA group data.Frederick Muriuki Muriithi
2023-04-10Add search and link for mRNA Assay datasets.Frederick Muriuki Muriithi
2023-04-10Migrations for linking genotype files.Frederick Muriuki Muriithi
2023-04-10Update expected request key.Frederick Muriuki Muriithi
2023-04-10Enable search, filtering out selected, but not linked dataFrederick Muriuki Muriithi
2023-04-08auth: Link genotype datasets to groups.Frederick Muriuki Muriithi
2023-04-06Fix linting issuesFrederick Muriuki Muriithi
2023-04-06Remove deprecated `gn3.db_utils.database_connector` functionFrederick Muriuki Muriithi
2023-04-05Enable use of `database_connection` in scripts without current_appFrederick Muriuki Muriithi
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