Age | Commit message (Expand) | Author |
---|---|---|
2021-07-10 | db: phenotypes: Add Probeset data structures...* gn3/db/phenotypes.py (Probeset): New dataclass. (probeset_mapping): New dict. * gn3/db/__init__.py: Add probeset_mapping and Probeset. | BonfaceKilz |
2021-06-29 | Replace list with a tuple as an argument when setting success_codes...* gn3/commands.py (run_cmd): Replace type of success_codes from List to Tuple * gn3/computations/diff.py (generate_diff): Pass success_codes as a Tuple when calling "run_cmd". | BonfaceKilz |
2021-06-29 | guix: Add diffutils as a propagated input | BonfaceKilz |
2021-06-29 | guix: Remove commented out hunk | BonfaceKilz |
2021-06-29 | gn3: diff: Set success_codes when running the diff tool | BonfaceKilz |
2021-06-29 | gn3: commands: Add extra arg that sets the success codes to check...* gn3/commands.py (run_cmd): Some commands like "diff" return non-standard error codes. To make this fn more robust, add an extra optional argument that sets what successful codes to check. | BonfaceKilz |
2021-06-29 | tests: test_commands: Add extra check for when an error occurs | BonfaceKilz |
2021-06-29 | Add a diffing function...For now the diff function uses the Linux tool "diff" to generate the diff since it is efficient and straightforward. * gn3/computations/diff.py (generate_diff): New function. * tests/unit/computations/test_diff.py: Test cases for ☝🏾. | BonfaceKilz |
2021-06-29 | tests: test_data: Add test data that contains trait data for 10007 | BonfaceKilz |
2021-06-25 | Check for the correct result code...When programs terminate with an error, they usually return a -1! | BonfaceKilz |
2021-06-23 | Merge pull request #21 from genenetwork/fix/biweight-errors...Fix/biweight errors | BonfaceKilz |
2021-06-23 | fix pylint issues | Alexander Kabui |
2021-06-23 | minor fixes for biweight script | Alexander Kabui |
2021-06-22 | scripts: laminar: Add json with hooks for running a linter | BonfaceKilz |
2021-06-22 | scripts: laminar: Add sh scripts for CI | BonfaceKilz |
2021-06-21 | Merge pull request #20 from genenetwork/feature/biweight-correlation...add biweight r script and tests | BonfaceKilz |
2021-06-20 | minor fix docstring | Alexander Kabui |
2021-06-20 | merge main | Alexander Kabui |
2021-06-20 | fix conflict | Alexander Kabui |
2021-06-20 | make requested changes to biweight | Alexander Kabui |
2021-06-18 | Merge pull request #13 from zsloan/feature/add_rqtl_endpoints...Feature/add rqtl endpoints | zsloan |
2021-06-18 | Fixed another error where test_generate_rqtl_command didn't include the filen... | zsloan |
2021-06-18 | Fixed file type from json to csv for test_generate_rqtl_command | zsloan |
2021-06-18 | Fixed test_rqtl.py to include Rscript in the command | zsloan |
2021-06-18 | Fixed test_compose_rqtl_command test; forgot to include Rscript in the command | zsloan |
2021-06-18 | Change test_compose_rqtl_command in test_commands.py to have different argume......Changed some parameters in test_compose_rqtl_cmd to avoid pylint complaining about duplicate code | zsloan |
2021-06-18 | Fixed pylint issues | zsloan |
2021-06-18 | add ignore_missing_imports for numpy in mypy.ini since it complains about tha... | zsloan |
2021-06-18 | Resolve mypy errors in computations/rqtl.py | zsloan |
2021-06-18 | Fixed spelling of coeffient to coefficient | zsloan |
2021-06-18 | minor fixes | Alexander Kabui |
2021-06-18 | remove ununsed variables | Alexander Kabui |
2021-06-18 | refactor perf query functions | Alexander Kabui |
2021-06-18 | rename perf query file | Alexander Kabui |
2021-06-18 | pep8 formatting | Alexander Kabui |
2021-06-18 | add tests to setup packages | Alexander Kabui |
2021-06-18 | add types and dataset names | Alexander Kabui |
2021-06-18 | initial commit for queries perfomance tests | Alexander Kabui |
2021-06-18 | db: test_db: Add extra variable in test data for "id" | BonfaceKilz |
2021-06-18 | Rename json_data column to json_diff_data | BonfaceKilz |
2021-06-18 | gn3: db: Fix how columns from tables is resolved | BonfaceKilz |
2021-06-18 | gn3: db: Add "id_" property to metadata_audit class and mapping | BonfaceKilz |
2021-06-18 | tests: test_db: Add a test-case for fetchall | BonfaceKilz |
2021-06-18 | gn3: db: Add "fetchall" method. | BonfaceKilz |
2021-06-18 | gn3: metadata_audit: Make props for MetadataAudit class optional | BonfaceKilz |
2021-06-18 | gn3: db: Make "WHERE" clause optional...* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg. | BonfaceKilz |
2021-06-18 | gn3: db: Use correct DATACLASSMAP entry from metadata_audit | BonfaceKilz |
2021-06-18 | tests: test_db: Rename TestPhenotype | BonfaceKilz |
2021-06-18 | tests: test_phenotype: Rename to test_db | BonfaceKilz |
2021-06-18 | gn3: db: sort imports | BonfaceKilz |