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2023-05-22Use string literal concatenation to make genofile_path line shorterzsloan
2023-05-22Fix quotes when setting genofile_pathzsloan
2023-05-22Fix return typing for get_trait_sample_datazsloan
2023-05-22Change type from 'any' to 'Any'zsloan
2023-05-22Use f-string for setting genofile_pathzsloan
2023-05-22Include encoding in open statement to address pylint W1514zsloan
2023-05-22Initialize 'line'; previous pylint complained because line might not be initi...zsloan
2023-05-22Use 'with open()' syntaxzsloan
2023-05-22Remove unused variable this_datazsloan
2023-05-22Include all samples in trait sample datazsloan
2023-05-22Fix sample data CSV query to only fetch distinct sampleszsloan
2023-05-22Fix get_trait_sample_data functionzsloan
2023-05-22Fix retrieve_sample_list function to correctly get genofile_pathzsloan
2023-05-22Commit update/insert queries, since they don't seem to be executed otherwise ...zsloan
2023-05-22Add function for retrieving group name (given group ID)zsloan
2023-05-22Add function for retrieving phenotype sample data as dictzsloan
2023-05-22Add function for retrieving samplelist from .geno filezsloan
2023-05-22Make directory at "path" and all intermediate ones.Frederick Muriuki Muriithi
2023-05-19auth: Provide user and resource info in the trait dataFrederick Muriuki Muriithi
2023-05-19auth: Check for json on authorisation endpoint. Add user data.Frederick Muriuki Muriithi
2023-05-18auth: Rename collectionsFrederick Muriuki Muriithi
2023-05-18auth: user collections: Add and/or remove traits.Frederick Muriuki Muriithi
2023-05-17auth: Delete collections by ID.Frederick Muriuki Muriithi
2023-05-17auth: Import/Delete Anonymous CollectionsFrederick Muriuki Muriithi
2023-05-16auth: View a collection by its ID.Frederick Muriuki Muriithi
2023-05-15collections: Move code to new package. Create new collections.Frederick Muriuki Muriithi
2023-05-12auth: Provide separate endpoint for anonymous collections.Frederick Muriuki Muriithi
2023-05-11auth: Fix bug with migration of user collectionsFrederick Muriuki Muriithi
2023-05-10auth: Add the /oauth2/user/collections/list endpointFrederick Muriuki Muriithi
2023-05-10auth: Only check deliverability of emails at registration.Frederick Muriuki Muriithi
2023-05-09auth: Implement "Authorization Code Flow"auth/implement-authorization-code-flowFrederick Muriuki Muriithi
2023-04-27auth: Retrieve `system:*` privileges from resource rolesFrederick Muriuki Muriithi
2023-04-27auth: List also the non-resource privileges the user hasFrederick Muriuki Muriithi
2023-04-27auth: Add authorisation checks for role editting.Frederick Muriuki Muriithi
2023-04-27oauth2: Provide missing `user_editable` argument.Frederick Muriuki Muriithi
2023-04-25auth: bug: Provide missing `user_editable` argument.Frederick Muriuki Muriithi
2023-04-25auth: provide `user_editable` flag in dictified outputFrederick Muriuki Muriithi
2023-04-25auth: Roles: Check for editabilityFrederick Muriuki Muriithi
2023-04-24auth: Return the actual privileges for the userFrederick Muriuki Muriithi
2023-04-21logging: Set LOG LEVEL on root logger to enable logsFrederick Muriuki Muriithi
2023-04-21auth: Attach linked data to specific resources.Frederick Muriuki Muriithi
2023-04-21Setup module for loggingFrederick Muriuki Muriithi
2023-04-21auth: Fetch user group phenotypes not attached to a resource.Frederick Muriuki Muriithi
2023-04-19oauth2: Link the phenotype traits to user groups.Frederick Muriuki Muriithi
2023-04-19Fix minor linting and typing issuesFrederick Muriuki Muriithi
2023-04-19auth: Setup selected traits correctlyFrederick Muriuki Muriithi
2023-04-19auth: phenotypes - provide default empty list for selected traits.Frederick Muriuki Muriithi
2023-04-18auth: Pass `--per-page` and `--selected` options.Frederick Muriuki Muriithi
2023-04-18auth: Consistently JSON encode values.Frederick Muriuki Muriithi
2023-04-17Fix typo, os.environment -> os.environMunyoki Kilyungi
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