index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2023-04-04
Add tables to link genotype data
Frederick Muriuki Muriithi
2023-03-23
tests: Set up fixture and mock out config variable
Frederick Muriuki Muriithi
2023-03-23
auth: list the species in the database.
Frederick Muriuki Muriithi
2023-03-23
Docs: Add a note on how the configuration system works.
Frederick Muriuki Muriithi
2023-03-23
auth: Don't try loading the user if no client is found
Frederick Muriuki Muriithi
2023-03-23
conf: use flask.current_app.config not in gn3.settings
Frederick Muriuki Muriithi
2023-03-22
auth: data linking: build functions to fetch unlinked phenotypes
Frederick Muriuki Muriithi
2023-03-22
auth: migrations for linking phenotype data
Frederick Muriuki Muriithi
2023-03-22
auth: Enable linking multiple datasets to the group at once.
Frederick Muriuki Muriithi
2023-03-22
auth: Remove the tables used for linking data to resources
Frederick Muriuki Muriithi
2023-03-20
Disable fetching case-attributes when getting sample data
Munyoki Kilyungi
2023-03-20
auth: data: Enable offset in queries
Frederick Muriuki Muriithi
2023-03-20
auth: data: List Phenotypes at the trait level
Frederick Muriuki Muriithi
2023-03-20
Fix get_all_species test
zsloan
2023-03-18
oauth2: resources: toggle whether a resource is public or not
Frederick Muriuki Muriithi
2023-03-18
auth: resources: Disallow duplicate resource names.
Frederick Muriuki Muriithi
2023-03-17
Add conn.commit() to queries in sample_data.py
zsloan
2023-03-17
Change get_all_species query to order by Family
zsloan
2023-03-15
auth: Data Migrations: Rework migration trigger
Frederick Muriuki Muriithi
2023-03-14
auth: Fix some linting and typing issues.
Frederick Muriuki Muriithi
2023-03-13
Move doc to issue tracker
Pjotr Prins
2023-03-13
oauth2: data: Temporarily escalate privileges to enable migration
Frederick Muriuki Muriithi
2023-03-13
auth: separate user detail migration from data migration
Frederick Muriuki Muriithi
2023-03-13
Add 'ON UPDATE/DELETE' clauses to foreign keys.
Frederick Muriuki Muriithi
2023-03-13
auth: cURL: Add some docs on using cURL
Frederick Muriuki Muriithi
2023-03-10
auth: data-migration: Fix minor bugs
Frederick Muriuki Muriithi
2023-03-09
auth: redis data: migrate data in redis
Frederick Muriuki Muriithi
2023-03-09
auth: data migration: Data migration outline
Frederick Muriuki Muriithi
2023-03-09
auth: introspection: Protect introspection endpoint
Frederick Muriuki Muriithi
2023-03-08
auth: users: Use the same basic functions for password hashing
Frederick Muriuki Muriithi
2023-03-08
Replace Bcrypt with Argon2 for better security.
Frederick Muriuki Muriithi
2023-03-07
auth: group_roles: Enable addition/deletion of privileges
Frederick Muriuki Muriithi
2023-03-07
auth: resources: unassign roles on resource from a user.
Frederick Muriuki Muriithi
2023-03-07
auth: user_by_id: Return a user or raise an exception
Frederick Muriuki Muriithi
2023-03-06
auth: privileges/roles: fix issues caught by tests.
Frederick Muriuki Muriithi
2023-03-06
auth: resources: Enable assigning a user roles on resources
Frederick Muriuki Muriithi
2023-03-06
auth: resources: Link role's group to the resource's group
Frederick Muriuki Muriithi
2023-03-06
auth: resources: Get all users with access to a particular resource.
Frederick Muriuki Muriithi
2023-03-03
auth: Enable viewing group role details.
Frederick Muriuki Muriithi
2023-03-03
auth: group roles: enable creation and listing of group roles.
Frederick Muriuki Muriithi
2023-03-02
auth: user registration: Rework error checking. Add email validation
Frederick Muriuki Muriithi
2023-03-01
Fetch sampledata
Munyoki Kilyungi
2023-03-01
Open lmdb path in readonly mode
Munyoki Kilyungi
2023-03-01
Create API endpoint for fetching trait metadata
Munyoki Kilyungi
2023-03-01
Fetch trait metadata from RDF
Munyoki Kilyungi
2023-02-28
auth: Unlink data from resources
data-access-levels-endpoint
Frederick Muriuki Muriithi
2023-02-28
auth: Unlink data from resources
Frederick Muriuki Muriithi
2023-02-27
auth: Endpoint to get access levels for data
Frederick Muriuki Muriithi
2023-02-24
auth: resources: Fix query for data not linked to resources
Frederick Muriuki Muriithi
2023-02-24
auth: resources: Fix queries loading resources data.
Frederick Muriuki Muriithi
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