genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2021-02-24	Add tests for "/gemma/run" endpoint	BonfaceKilz
2021-02-24	Update how gemma(extracted from gn2) is computed	BonfaceKilz
2021-02-24	Create a new helper function for generating k_values and GWA	BonfaceKilz
2021-02-24	Add procedure that checks whether a list of paths exist	BonfaceKilz
2021-02-24	Check if phenotype exists before creating one	BonfaceKilz
2021-02-24	Add new procedure that computes the hash of an array of strings	BonfaceKilz
2021-02-24	Add mypy-typing to function	BonfaceKilz
2021-02-24	Gitignore generated windows/ mac files	BonfaceKilz
2021-02-24	Append random 6 chars to generated phenotype file	BonfaceKilz
2021-02-24	Create a new method for generating a valid phenotype file on the fly	BonfaceKilz
2021-02-24	Add GENODIR extra param	BonfaceKilz
2021-02-24	Add endpoint for running GEMMA	BonfaceKilz
2021-02-24	Delete unnececessary gemma endpoints	BonfaceKilz
2021-02-24	Remove test "/gemma" stub	BonfaceKilz
2021-02-24	Add integration test for "/gemma/version" endpoint	BonfaceKilz
2021-02-24	gn3: api: gemma: Add endpoint for checking gemma-wrapper version	BonfaceKilz
2021-02-24	Update "compose_gemma_cmd" tests	BonfaceKilz
2021-02-24	gn3: commands: Remove token and metadata_filename args	BonfaceKilz
2021-02-24	Add type checking to gh workflows	BonfaceKilz
2021-02-24	Add stubbed gemma endpoints	BonfaceKilz
2021-02-17	Add gemma-wrapper	BonfaceKilz
2021-02-16	Add test cases for "/metadata/upload" endpoint	BonfaceKilz
2021-02-16	Return the correct message and status code in "/metadata/upload"	BonfaceKilz
2021-02-16	Register "general" blueprint endpoints	BonfaceKilz
2021-02-16	Add extra default config for bcrypt	BonfaceKilz
2021-02-16	Add new endpoint for uploading data	BonfaceKilz
2021-02-16	Add procedure for uploading gzipped file	BonfaceKilz
2021-02-16	Add extra option to set email when queueing CMD	BonfaceKilz
2021-02-16	Add python-bcrypt as a dependency	BonfaceKilz
2021-02-16	Add basic integration tests to test out the API	BonfaceKilz
2021-02-16	Register blueprints in gn3/app.py	BonfaceKilz
2021-02-16	Add instructions on how to run the flask app	BonfaceKilz
2021-02-16	Register gemma blueprints	BonfaceKilz
2021-02-16	Add basic worker for processing commands	BonfaceKilz
2021-02-16	Add new test cases for run_cmd	BonfaceKilz
2021-02-16	gn3: commands: Add new procedure for running a command	BonfaceKilz
2021-02-15	Add linting rules for any scm files. Useful for guix.scm	BonfaceKilz
2021-02-15	Update README with bootstrap instructions and how to run tests	BonfaceKilz
2021-02-15	Add genenetwork3 package definition	BonfaceKilz
2021-02-15	requirements.txt: Add python-numpy 1.17.3	BonfaceKilz
2021-02-15	Add default redis config	BonfaceKilz
2021-02-15	Add test stubbed gemma endpoint	BonfaceKilz
2021-02-15	Bootsrap the flask application	BonfaceKilz
2021-02-12	Add configuration file for the project	BonfaceKilz
2021-02-12	Use sorted list of files when calculating md5sums of directory	BonfaceKilz
2021-02-12	Create python-app.yml	BonfaceKilz
2021-02-12	Add skeleton flask entry-point	BonfaceKilz
2021-02-12	Add custom gn3 exceptions	BonfaceKilz
2021-02-12	Add initial requirements.txt	BonfaceKilz
2021-02-12	Add new procedure for queueing a command	BonfaceKilz