index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2023-04-17
auth: Delete code that is no longer used
Frederick Muriuki Muriithi
2023-04-15
Decouple `gn3.db_utils` from `flask.current_app`.
Frederick Muriuki Muriithi
2023-04-14
auth: Add external script to search for phenotypes
Frederick Muriuki Muriithi
2023-04-14
auth: Disconnect module from flask application
Frederick Muriuki Muriithi
2023-04-12
auth: Enable listing of unlinked genotype/mRNA group data.
Frederick Muriuki Muriithi
2023-04-10
Add search and link for mRNA Assay datasets.
Frederick Muriuki Muriithi
2023-04-10
Migrations for linking genotype files.
Frederick Muriuki Muriithi
2023-04-10
Update expected request key.
Frederick Muriuki Muriithi
2023-04-10
Enable search, filtering out selected, but not linked data
Frederick Muriuki Muriithi
2023-04-08
auth: Link genotype datasets to groups.
Frederick Muriuki Muriithi
2023-04-06
Fix linting issues
Frederick Muriuki Muriithi
2023-04-06
Remove deprecated `gn3.db_utils.database_connector` function
Frederick Muriuki Muriithi
2023-04-05
Enable use of `database_connection` in scripts without current_app
Frederick Muriuki Muriithi
2023-04-04
auth: Search for linking genotype datasets.
Frederick Muriuki Muriithi
2023-04-04
Add tables to link genotype data
Frederick Muriuki Muriithi
2023-03-23
tests: Set up fixture and mock out config variable
Frederick Muriuki Muriithi
2023-03-23
auth: list the species in the database.
Frederick Muriuki Muriithi
2023-03-23
Docs: Add a note on how the configuration system works.
Frederick Muriuki Muriithi
2023-03-23
auth: Don't try loading the user if no client is found
Frederick Muriuki Muriithi
2023-03-23
conf: use flask.current_app.config not in gn3.settings
Frederick Muriuki Muriithi
2023-03-22
auth: data linking: build functions to fetch unlinked phenotypes
Frederick Muriuki Muriithi
2023-03-22
auth: migrations for linking phenotype data
Frederick Muriuki Muriithi
2023-03-22
auth: Enable linking multiple datasets to the group at once.
Frederick Muriuki Muriithi
2023-03-22
auth: Remove the tables used for linking data to resources
Frederick Muriuki Muriithi
2023-03-20
Disable fetching case-attributes when getting sample data
Munyoki Kilyungi
2023-03-20
auth: data: Enable offset in queries
Frederick Muriuki Muriithi
2023-03-20
auth: data: List Phenotypes at the trait level
Frederick Muriuki Muriithi
2023-03-20
Fix get_all_species test
zsloan
2023-03-18
oauth2: resources: toggle whether a resource is public or not
Frederick Muriuki Muriithi
2023-03-18
auth: resources: Disallow duplicate resource names.
Frederick Muriuki Muriithi
2023-03-17
Add conn.commit() to queries in sample_data.py
zsloan
2023-03-17
Change get_all_species query to order by Family
zsloan
2023-03-15
auth: Data Migrations: Rework migration trigger
Frederick Muriuki Muriithi
2023-03-14
auth: Fix some linting and typing issues.
Frederick Muriuki Muriithi
2023-03-13
Move doc to issue tracker
Pjotr Prins
2023-03-13
oauth2: data: Temporarily escalate privileges to enable migration
Frederick Muriuki Muriithi
2023-03-13
auth: separate user detail migration from data migration
Frederick Muriuki Muriithi
2023-03-13
Add 'ON UPDATE/DELETE' clauses to foreign keys.
Frederick Muriuki Muriithi
2023-03-13
auth: cURL: Add some docs on using cURL
Frederick Muriuki Muriithi
2023-03-10
auth: data-migration: Fix minor bugs
Frederick Muriuki Muriithi
2023-03-09
auth: redis data: migrate data in redis
Frederick Muriuki Muriithi
2023-03-09
auth: data migration: Data migration outline
Frederick Muriuki Muriithi
2023-03-09
auth: introspection: Protect introspection endpoint
Frederick Muriuki Muriithi
2023-03-08
auth: users: Use the same basic functions for password hashing
Frederick Muriuki Muriithi
2023-03-08
Replace Bcrypt with Argon2 for better security.
Frederick Muriuki Muriithi
2023-03-07
auth: group_roles: Enable addition/deletion of privileges
Frederick Muriuki Muriithi
2023-03-07
auth: resources: unassign roles on resource from a user.
Frederick Muriuki Muriithi
2023-03-07
auth: user_by_id: Return a user or raise an exception
Frederick Muriuki Muriithi
2023-03-06
auth: privileges/roles: fix issues caught by tests.
Frederick Muriuki Muriithi
2023-03-06
auth: resources: Enable assigning a user roles on resources
Frederick Muriuki Muriithi
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