index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2023-05-23
auth: Enable user masquerade
Frederick Muriuki Muriithi
2023-05-23
Document how to log out information in GN3
Frederick Muriuki Muriithi
2023-05-22
Use string literal concatenation to make genofile_path line shorter
zsloan
2023-05-22
Fix quotes when setting genofile_path
zsloan
2023-05-22
Fix return typing for get_trait_sample_data
zsloan
2023-05-22
Change type from 'any' to 'Any'
zsloan
2023-05-22
Use f-string for setting genofile_path
zsloan
2023-05-22
Include encoding in open statement to address pylint W1514
zsloan
2023-05-22
Initialize 'line'; previous pylint complained because line might not be initi...
zsloan
2023-05-22
Use 'with open()' syntax
zsloan
2023-05-22
Remove unused variable this_data
zsloan
2023-05-22
Include all samples in trait sample data
zsloan
2023-05-22
Fix sample data CSV query to only fetch distinct samples
zsloan
2023-05-22
Fix get_trait_sample_data function
zsloan
2023-05-22
Fix retrieve_sample_list function to correctly get genofile_path
zsloan
2023-05-22
Commit update/insert queries, since they don't seem to be executed otherwise ...
zsloan
2023-05-22
Add function for retrieving group name (given group ID)
zsloan
2023-05-22
Add function for retrieving phenotype sample data as dict
zsloan
2023-05-22
Add function for retrieving samplelist from .geno file
zsloan
2023-05-22
Make directory at "path" and all intermediate ones.
Frederick Muriuki Muriithi
2023-05-19
auth: Provide user and resource info in the trait data
Frederick Muriuki Muriithi
2023-05-19
auth: Check for json on authorisation endpoint. Add user data.
Frederick Muriuki Muriithi
2023-05-18
auth: Rename collections
Frederick Muriuki Muriithi
2023-05-18
auth: user collections: Add and/or remove traits.
Frederick Muriuki Muriithi
2023-05-17
auth: Delete collections by ID.
Frederick Muriuki Muriithi
2023-05-17
auth: Import/Delete Anonymous Collections
Frederick Muriuki Muriithi
2023-05-16
auth: View a collection by its ID.
Frederick Muriuki Muriithi
2023-05-15
collections: Move code to new package. Create new collections.
Frederick Muriuki Muriithi
2023-05-12
auth: Provide separate endpoint for anonymous collections.
Frederick Muriuki Muriithi
2023-05-11
auth: Fix bug with migration of user collections
Frederick Muriuki Muriithi
2023-05-10
auth: Add the /oauth2/user/collections/list endpoint
Frederick Muriuki Muriithi
2023-05-10
auth: Only check deliverability of emails at registration.
Frederick Muriuki Muriithi
2023-05-09
auth: Implement "Authorization Code Flow"
auth/implement-authorization-code-flow
Frederick Muriuki Muriithi
2023-04-27
auth: Retrieve `system:*` privileges from resource roles
Frederick Muriuki Muriithi
2023-04-27
auth: List also the non-resource privileges the user has
Frederick Muriuki Muriithi
2023-04-27
auth: Add authorisation checks for role editting.
Frederick Muriuki Muriithi
2023-04-27
oauth2: Provide missing `user_editable` argument.
Frederick Muriuki Muriithi
2023-04-25
auth: bug: Provide missing `user_editable` argument.
Frederick Muriuki Muriithi
2023-04-25
auth: provide `user_editable` flag in dictified output
Frederick Muriuki Muriithi
2023-04-25
auth: Roles: Check for editability
Frederick Muriuki Muriithi
2023-04-24
auth: Return the actual privileges for the user
Frederick Muriuki Muriithi
2023-04-21
logging: Set LOG LEVEL on root logger to enable logs
Frederick Muriuki Muriithi
2023-04-21
auth: Attach linked data to specific resources.
Frederick Muriuki Muriithi
2023-04-21
Setup module for logging
Frederick Muriuki Muriithi
2023-04-21
auth: Fetch user group phenotypes not attached to a resource.
Frederick Muriuki Muriithi
2023-04-19
oauth2: Link the phenotype traits to user groups.
Frederick Muriuki Muriithi
2023-04-19
Fix minor linting and typing issues
Frederick Muriuki Muriithi
2023-04-19
auth: Setup selected traits correctly
Frederick Muriuki Muriithi
2023-04-19
auth: phenotypes - provide default empty list for selected traits.
Frederick Muriuki Muriithi
2023-04-18
auth: Pass `--per-page` and `--selected` options.
Frederick Muriuki Muriithi
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