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2021-07-28Make name retrieval more generalMuriithi Frederick Muriuki
2021-07-28Retrieve 'ProbeSet' trait nameMuriithi Frederick Muriuki
2021-07-26Merge branch 'main' of github.com:genenetwork/genenetwork3Muriithi Frederick Muriuki
2021-07-26Fix issues caught by pylintMuriithi Frederick Muriuki
2021-07-26Check if corr_coefficient is NaN, since apparently it's stored as NaN instead...zsloan
2021-07-23sql: metadata_audit: Make char-set encoding explicit(utf8mb4)BonfaceKilz
2021-07-23Add data examples for `slink`. Implement function.Muriithi Frederick Muriuki
2021-07-23Add more test dataMuriithi Frederick Muriuki
2021-07-23Iterate through all valid pairsMuriithi Frederick Muriuki
2021-07-23Extract function to flatten list of listsMuriithi Frederick Muriuki
2021-07-23Fix issue caught in `nearest` while testing `slink`Muriithi Frederick Muriuki
2021-07-23New function (`slink`): return [] on exceptionMuriithi Frederick Muriuki
2021-07-23Add dummy module documentationMuriithi Frederick Muriuki
2021-07-23Add docstring for `nearest' functionMuriithi Frederick Muriuki
2021-07-22Get shortest distance from two lists/tuples of member coordinatesMuriithi Frederick Muriuki
2021-07-22Extract common `is_list_or_tuple' functionMuriithi Frederick Muriuki
2021-07-22Test for shortest distance between members in a list and coordinateMuriithi Frederick Muriuki
2021-07-22Merge branch 'main' of github.com:genenetwork/genenetwork3Muriithi Frederick Muriuki
2021-07-22Check that given list and both coordinates, we get shortest distanceMuriithi Frederick Muriuki
2021-07-22Check that all distances are positive or zeroMuriithi Frederick Muriuki
2021-07-22Check that distance from A to B is same as from B to AMuriithi Frederick Muriuki
2021-07-22Move sql updates into dirPjotr Prins
2021-07-22Check that child distance from itself is zeroMuriithi Frederick Muriuki
2021-07-22Check the child lengths are same as length of parentMuriithi Frederick Muriuki
2021-07-22Add docstringMuriithi Frederick Muriuki
2021-07-22Check that list and its direct children are not emptyMuriithi Frederick Muriuki
2021-07-22Implement check for lists or tuplesMuriithi Frederick Muriuki
2021-07-22sql: Add schema and schema map.Arun Isaac
2021-07-21Extract tests from code in GN1Muriithi Frederick Muriuki
2021-07-20Implement the correlation functionMuriithi Frederick Muriuki
2021-07-20Add test for code to move over from GN1Muriithi Frederick Muriuki
2021-07-10gn3: db: Use correct type for columns arg in fetch functionsBonfaceKilz
2021-07-10Fix pylint issuesBonfaceKilz
2021-07-10db: test_db: Test that a fetch is correct when columns are specifiedBonfaceKilz
2021-07-10gn3: db: Add extra argument to specify column in fetch statementsBonfaceKilz
2021-07-10db: phenotypes: Add Probeset data structuresBonfaceKilz
2021-06-29Replace list with a tuple as an argument when setting success_codesBonfaceKilz
2021-06-29guix: Add diffutils as a propagated inputBonfaceKilz
2021-06-29guix: Remove commented out hunkBonfaceKilz
2021-06-29gn3: diff: Set success_codes when running the diff toolBonfaceKilz
2021-06-29gn3: commands: Add extra arg that sets the success codes to checkBonfaceKilz
2021-06-29tests: test_commands: Add extra check for when an error occursBonfaceKilz
2021-06-29Add a diffing functionBonfaceKilz
2021-06-29tests: test_data: Add test data that contains trait data for 10007BonfaceKilz
2021-06-25Check for the correct result codeBonfaceKilz
2021-06-23Merge pull request #21 from genenetwork/fix/biweight-errorsBonfaceKilz
2021-06-23fix pylint issuesAlexander Kabui
2021-06-23minor fixes for biweight scriptAlexander Kabui
2021-06-22scripts: laminar: Add json with hooks for running a linterBonfaceKilz
2021-06-22scripts: laminar: Add sh scripts for CIBonfaceKilz