Age | Commit message (Expand) | Author |
---|---|---|
2021-05-08 | Add method for inserting publication_data | BonfaceKilz |
2021-05-08 | Add webqtlCaseData DS to keep track of case data in one trait | BonfaceKilz |
2021-05-08 | Replace namedtuple with a dataclass | BonfaceKilz |
2021-05-08 | Add method for inserting phenotypes | BonfaceKilz |
2021-05-08 | Add method for inserting publications | BonfaceKilz |
2021-05-08 | Add method to fetch riset name and id | BonfaceKilz |
2021-05-08 | Add endpoints for (batch) entering phenotypes and genotypes | BonfaceKilz |
2021-05-08 | Add issue and PR templates | BonfaceKilz |
2021-05-08 | Add extra procedure for parsing a genotype file...* gn3/computations/parsers.py (parse_genofile): New procedure. * tests/unit/computations/test_parsers.py: New test files for above. | BonfaceKilz |
2021-05-08 | Add extra genotype test file...* tests/unit/test_data/genotype.txt: New file. * tests/unit/test_file_utils.py: Update failing test. | BonfaceKilz |
2021-05-08 | Add python-mysqlclient as a dependency | BonfaceKilz |
2021-05-05 | Merge pull request #9 from genenetwork/Feature/speed-up-correlation...Feature/speed up correlation | BonfaceKilz |
2021-05-03 | add default no of cores | Alexander Kabui |
2021-05-03 | modify default SQL_URI | Alexander Kabui |
2021-05-03 | add trait_id fix mypy issues | Alexander Kabui |
2021-05-03 | minor fixes for tiss correlation tests and naming | Alexander Kabui |
2021-05-03 | replace database with conn | Alexander Kabui |
2021-05-02 | remove trait and dataset blueprint | Alexander Kabui |
2021-05-02 | delete dataset and trait files | Alexander Kabui |
2021-04-20 | pep8 formatting | Alexander Kabui |
2021-04-20 | add experiment function for computing tissue correlation using multiprocessing | Alexander Kabui |
2021-04-18 | refactor:return trait_name in corr_results | Alexander Kabui |
2021-04-17 | ad pep8 formatting | Alexander Kabui |
2021-04-17 | refactor tests for lit | Alexander Kabui |
2021-04-17 | add sort for correlation results...refactor return data type for tissue and lit | Alexander Kabui |
2021-04-16 | add benchmark function for sample r | Alexander Kabui |
2021-04-16 | benchmark normal function for sample r | Alexander Kabui |
2021-04-15 | optimization for sample correlation | Alexander Kabui |
2021-04-15 | test endpoint for fetching probeset data types | Alexander Kabui |
2021-04-12 | replace experimental db | Alexander Kabui |
2021-04-12 | fix tests for lit correlation | Alexander Kabui |
2021-04-12 | fix merge conflict | Alexander Kabui |
2021-04-12 | Integrate correlation API...- add new api for gn2-gn3 sample r integration - delete map for sample list to values - add db util file - add python msql-client dependency - add db for fetching lit correlation results - add unittests for db utils - add tests for db_utils - modify api for fetching lit correlation results - refactor Mock Database Connector and unittests - add sql url parser - add SQL URI env variable - refactor code for db utils - modify return data for lit correlation - refactor tissue correlation endpoint - replace db_instance with conn | Alexander Kabui |
2021-04-06 | add mock db for tests | Alexander Kabui |
2021-04-06 | fix Docstrings | Alexander Kabui |
2021-04-06 | delete unnecessary functions and comments | Alexander Kabui |
2021-04-05 | fix for fetching dataset traits data | Alexander Kabui |
2021-04-04 | refactor code for trait data...modify unittest and integration tests for datasets | Alexander Kabui |
2021-04-04 | fix:db connection | Alexander Kabui |
2021-04-03 | add tests for getting trait data | Alexander Kabui |
2021-04-01 | add mysqclient to requirements file | Alexander Kabui |
2021-03-31 | add mysqlclient in guix...add env variable for GN2_URL | Alexander Kabui |
2021-03-31 | add fetch dataset strain id,strain name and unittests | Alexander Kabui |
2021-03-31 | add temp_db setup and integration tests | Alexander Kabui |
2021-03-31 | add datasets functions and endpoints | Alexander Kabui |
2021-03-30 | refactor retrieve trait sample data and tests | Alexander Kabui |
2021-03-30 | modify getting sample data from db | Alexander Kabui |
2021-03-30 | register trait blueprint | Alexander Kabui |
2021-03-30 | initial commit for creating dataset | Alexander Kabui |
2021-03-30 | initial commit for creating trait and datasets | Alexander Kabui |